Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07467 ATGACTGCAAAGGCAGAGATGGAGTTTGCAGTTGAGGTTGAAGTACTTGGAAGGGTGAGACATAAGAATTTATTGGGCTTGAGAGGGTTCTATGCAGGTGGAGAAGAAAGGTTGATTGTCTATGATTACATGCCTAATCACAGCTTGCTCACTCATTTGCATGGTCAACTTGCTACCGATTGTCTATTAGATTGGCCTAAAAGAATGTGCATAGCAATTGGGGCAGCTGAAGGCTTAGCGTATTTGCACCATGAGGCAAATCCTCACATCATTCATAGAGACATAAAGGCAAGCAATGTTCTTTTAGACTCTGAATTTGAAGCCAAGGTTGCTGATTTTGGTTTTGCAAAGCTGATACCAGAGGGTGTAAGTCATCTTACGACAAGGGTTAAAGGCACCCTTGGATACTTGGCGCCAGAGTATGCCATGTGGGGGAAGGTTTCCGAGAGCTGTGATGTTTATAGCTTTGGGATTTTGCTTTTGGAGATTATCAGTGCAAAGAAACCGATTGAGAAACTCCCTGGCGGTATAAAAAGGGATATTGTTCAGTGGGTCACACCGTATGTCCAAAAGGGTGTCTTCAATCACATTGCAGATTCAAAGTTGAAGGGGAATTATGATTTGGAACAATTGAAATCTGTGGTCATGATTGCTATGAGATGCACAGATAGTAGCCCAGATAAGAGGCCCAGCATGGTAGAGGTGGTGGATTGGCTTAAGGGTGGTGTTGGGAAGAGAAAAAAACAGATTCCAAATTTGTGTCACAAGCATGGAGGAGACGAAGAGAATGAAGAAAACTATGAAGAGATTGGAACAAAGCCGTCCAAGTTCAAAATACCAAGTGATAATGATAGGCTTAAAATAAGATAA 870 0.4218 MTAKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGEERLIVYDYMPNHSLLTHLHGQLATDCLLDWPKRMCIAIGAAEGLAYLHHEANPHIIHRDIKASNVLLDSEFEAKVADFGFAKLIPEGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIISAKKPIEKLPGGIKRDIVQWVTPYVQKGVFNHIADSKLKGNYDLEQLKSVVMIAMRCTDSSPDKRPSMVEVVDWLKGGVGKRKKQIPNLCHKHGGDEENEENYEEIGTKPSKFKIPSDNDRLKIR. 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07467 289 ProSitePatterns Serine/Threonine protein kinases active-site signature. 90 102 IPR008271 GO:0004672|GO:0006468
Seca8g07467 289 FunFam PTI1-like tyrosine-protein kinase At3g15890 44 253 - -
Seca8g07467 289 PANTHER OS01G0253100 PROTEIN 3 245 - -
Seca8g07467 289 ProSiteProfiles Protein kinase domain profile. 1 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07467 289 SMART serkin_6 1 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07467 289 Pfam Protein tyrosine and serine/threonine kinase 4 237 IPR001245 GO:0004672|GO:0006468
Seca8g07467 289 PIRSF ILK 1 250 - -
Seca8g07467 289 Gene3D Transferase(Phosphotransferase) domain 1 45 251 - -
Seca8g07467 289 MobiDBLite consensus disorder prediction 250 289 - -
Seca8g07467 289 MobiDBLite consensus disorder prediction 253 272 - -
Seca8g07467 289 SUPERFAMILY Protein kinase-like (PK-like) 7 244 IPR011009 -
Seca8g07467 289 Gene3D Phosphorylase Kinase; domain 1 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07467 Seca-Chr8 171710190 171712368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07467 2 239 Trihelix Transcription Factor Family AT1G70460 44.628 5.46e-68 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Seca8g07467 PK_Tyr_Ser-Thr 2.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07467 - - gmx:100817283 508.449