Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07460 ATGGGAAGAGGGAAGGTGGTTCTGGAGAGAATAGAGAACAAGACGAATCGGCAAGTAACGTTCTCAAAGCGGAGGAGTGGTTTGTTGAAGAAAGCCTTTGAGCTATCTGTGCTTTGCGATGCTGAAATCGCCCTTATCATCTTCTCTACCCGTGGCAAGCTTTTTCAGTACAGCACCACCGACATTAACAAAATCATTGAGAAGTATCGTCAATGTTGCTTCAACAATATGTCTCAGACTGACGACTTGGCGGAACATCAATCACAGAGGTTATACCAGGAGCTTTTGATATTGAGAGTGAAGCATGAATCTCTTGAGCGGGCACAAAGGAATTTTTTGGGAGAAGAACTTGAGCCGCTTAGCCTGAAAGAATTGCAGAGTCTGGAGAAACAACTGGACAGAACGCTTACGCAAGCTCGAAAGCACCAAGTACTAATTAATTCACACTTAACCAGGCTCAAAAGTTGA 468 0.4402 MGRGKVVLERIENKTNRQVTFSKRRSGLLKKAFELSVLCDAEIALIIFSTRGKLFQYSTTDINKIIEKYRQCCFNNMSQTDDLAEHQSQRLYQELLILRVKHESLERAQRNFLGEELEPLSLKELQSLEKQLDRTLTQARKHQVLINSHLTRLKS. 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07460 155 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca8g07460 155 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 142 - -
Seca8g07460 155 FunFam MADS-box transcription factor 1 13 84 - -
Seca8g07460 155 Coils Coil 122 145 - -
Seca8g07460 155 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Seca8g07460 155 Pfam K-box region 85 145 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca8g07460 155 ProSiteProfiles K-box domain profile. 88 155 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca8g07460 155 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca8g07460 155 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca8g07460 155 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca8g07460 155 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Seca8g07460 155 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Seca8g07460 155 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca8g07460 155 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca8g07460 155 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07460 Seca-Chr8 171630172 171633877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07460 1 146 MADS-box Gene Family AT2G45650 55.405 4.41e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca8g07460 K-box 4.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07460 K09264 - gmx:100802197 241.121