Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07452 ATGGAAGCGAATCCTCCCCACGACGGCGATTTCAGCGAAGGAGAAAACGAAAGCGAAAGCGACACCCAAAGTGCCGATAACTCTCCCTCGGAGACGACAGCATCATTAGTGGGCCCGACGGAGCCGTTGCCGCCGCCGCCGGCGGTGCCGGCTCCACTGAAAGAAGAGCGGACGGAGACTGAGAACAGCGTGGAGGAGTCTCTCCCGGTGGGCGTTATTCCTATGCCGTTGACGATGTCAACGCCGGCGGCGGCGAAGAAACCGTCGAAGGACCGTCACACGAAAGTGGAGGGTCGCGGCCGAAGAATCCGAATGCCGGCAACCTGTGCCGCCAGGATCTTCCAGCTGACCCGGGAGCTCGGTCACAAGTCCGACGGAGAAACAATCCGGTGGTTGCTTGAGCACGCTGAACCGGCGATCATAGAAGCCACCGGCACCGGAACGATCCCTGCCATCGCGGTGTCCGTGGGCGGCACCCTAAAGATTCCAACTTCCTCGGCGGCGAGGCCAGACGGAGAAGACACCCCGAGGAAGCGAAGGAGGAGAGCATCAAACAGTGAATTCATTGATATGAACGATCAAGTTTCAGTTTGTTCAGGGCTTGCACCAATTGCACAAACCGCATACGGTGGTGGCAGTGGCAGTGGTAGCGTTAGTGGTGGTGGACTGGTCCCTTTGTGGCCTGTGGCAACTGGTGGTGGGTCTAATGGTACAGGGCCTTTCTTCATGTTTCCAAACTCTGCTAACCAGCCTCAGTACTGGGCCATTCCTGCAACCGCGGCCCCGTTTTTCAATGTGCAAGCCAGACCCATTTCGGGTTTTGTTTCTGCTATGCACATGCAACAACAATCAGGGGGGCACACTTCAAACCCTTCCTCCACTTTGGCCCCTGCTTTGAGCTCAGCAACTACTACAACTAATGCTAGTAGTACTATTACTACTTCTGCTGCTACCTCTTCCTCCACTTCTACACCCACCCAGATGCTCAGGGATTTCTCTCTGGAAATTTATGACAAGAAAGAGCTACAATTTTTGGGTCGTCCTGCTGCAAATTCAGAACCACCTCCTCCAACTTCAAAGCCTTGA 1086 0.5534 MEANPPHDGDFSEGENESESDTQSADNSPSETTASLVGPTEPLPPPPAVPAPLKEERTETENSVEESLPVGVIPMPLTMSTPAAAKKPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTIPAIAVSVGGTLKIPTSSAARPDGEDTPRKRRRRASNSEFIDMNDQVSVCSGLAPIAQTAYGGGSGSGSVSGGGLVPLWPVATGGGSNGTGPFFMFPNSANQPQYWAIPATAAPFFNVQARPISGFVSAMHMQQQSGGHTSNPSSTLAPALSSATTTTNASSTITTSAATSSSTSTPTQMLRDFSLEIYDKKELQFLGRPAANSEPPPPTSKP. 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07452 361 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 28 340 IPR005333 GO:0003700
Seca8g07452 361 MobiDBLite consensus disorder prediction 21 37 - -
Seca8g07452 361 MobiDBLite consensus disorder prediction 162 188 - -
Seca8g07452 361 ProSiteProfiles TCP domain profile. 89 143 IPR017887 -
Seca8g07452 361 MobiDBLite consensus disorder prediction 282 326 - -
Seca8g07452 361 MobiDBLite consensus disorder prediction 171 187 - -
Seca8g07452 361 Pfam TCP family transcription factor 89 168 IPR017887 -
Seca8g07452 361 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07452 Seca-Chr8 171560470 171561972 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07452 80 345 TCP Transcription Factor Family AT5G51910 53.285 2.51e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca8g07452 TCP 1.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07452 - - tpra:123922458 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07452 8 171560470 171561972 Seca8g07452 8 171560470 171561972 ECH