Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07442 ATGTATTCCGTCAATCATTTTTCCGACCCACAAACCTGTAATTCGGAGGTGTTTCTGGCGGCGAGCCACCCGAAGAAGCGTGCAGGGAGGAAGAAGTTCAGGGAGACGCGCCACCCAGTGTACCGCGGCGTGAGGAGGAGAGATTCCGGCAAGTGGGTGTGTGAGGTGCGAGAGCCCAACAAGAAGACTAGGATTTGGCTCGGGACATTCCCCACGCCGGAGATGGCGGCGCGTGCACATGACGTGGCAGCGATAGCGCTTAGGGGAAAATCCGCATGCCTCAACTTTGCGGACTCCGCATGGCGGTTGCCGGTTCCGGCCACGGCGGATGCAAGGGACATCCAGAAGGCGGCAGCGGAGGCGGCAGAGGCCTTCCGCCCGGTGACAGAGTCGGAGACAGATGAGGGGAGGAAGGATAATGAGTCTGCTTCGACGGCGGCGCTGGCGACGGAGACGGTGACGGTGACGGAGCAACAAGACGTTGAAGAAGAGGCGGTGCCGGAGTTCCTGAGAAACATGGTGCTCATGTCGCCAACACATTGCTGGGGAAGTGAGTATGGAACTGCTGACGTGGAATTTGATGATGCTGAAGTTTCATTGTGGAGTTATTCAATTTAA 618 0.5777 MYSVNHFSDPQTCNSEVFLAASHPKKRAGRKKFRETRHPVYRGVRRRDSGKWVCEVREPNKKTRIWLGTFPTPEMAARAHDVAAIALRGKSACLNFADSAWRLPVPATADARDIQKAAAEAAEAFRPVTESETDEGRKDNESASTAALATETVTVTEQQDVEEEAVPEFLRNMVLMSPTHCWGSEYGTADVEFDDAEVSLWSYSI. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07442 205 Gene3D AP2/ERF domain 40 98 IPR036955 GO:0003700|GO:0006355
Seca8g07442 205 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 12 203 IPR045277 GO:0003700
Seca8g07442 205 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Seca8g07442 205 Pfam AP2 domain 39 89 IPR001471 GO:0003700|GO:0006355
Seca8g07442 205 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Seca8g07442 205 SUPERFAMILY DNA-binding domain 40 99 IPR016177 GO:0003677
Seca8g07442 205 CDD AP2 41 99 IPR001471 GO:0003700|GO:0006355
Seca8g07442 205 MobiDBLite consensus disorder prediction 127 141 - -
Seca8g07442 205 FunFam Ethylene-responsive transcription factor 2 39 98 - -
Seca8g07442 205 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Seca8g07442 205 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Seca8g07442 205 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07442 Seca-Chr8 171432507 171433124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07442 19 203 AP2-EREBP Transcription Factor Family AT4G25470 59.184 3.13e-65 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca8g07442 AP2 1.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07442 - - lja:Lj5g3v2028390.1 299.671