Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca8g07441 | ATGGATGGTGCCAACCCTCCCTTCGGAAACATGCCCCTGCCTCCGTCTCCTATACAAGTCCCTCCTGACACCTCTTCCTCCGCACCAACCACTCCTTCCTCCTCTCCATCTCCGACACCCTCTGGCTTTCGCTACCGTGGAACCCGTTGCCGGAGTGGGAAATGGGTATCGGAGATAAGAGAGCCACGTAAAACAAAGCGCATTTGGCTTGGCACCTATGCCACAGCTGAAATGGCTGCTGCTGCCTATGATGTTGCTGCTCTCGCCTTGAAAGGACCAGACACGCAGCTTAACTTCCCCAATTCCATTCTCTCTTACCCCATTCCTGCTTCATTGTCCGCAACGGATATTCGTGCTGCTGCTGAAGCTGCTGCACAAGCCAGGCTGTTGAGGAACACGCCACAGAGTGGAGAATCGCAAAACCACCCTCTTTTGGAGGGTTCTGCGTCTGCGAGCAGCAATAATATTAGTGGAGGATCAGGTTTGATGATGAGTCATCATCAAGAATATATTGATGAGGATGAACTTTTGAATATGCCAAATTTGCTGGATGATATGGCTCGTGGAATGCAGGTTAGTCCCCCGAGGATTAATGCTTCCTTTTCTTCGGATGAATCGCCAGGGAATTCTGATGGGGATAACCTCTGGAGTTACACTTTTTGA | 663 | 0.5053 | MDGANPPFGNMPLPPSPIQVPPDTSSSAPTTPSSSPSPTPSGFRYRGTRCRSGKWVSEIREPRKTKRIWLGTYATAEMAAAAYDVAALALKGPDTQLNFPNSILSYPIPASLSATDIRAAAEAAAQARLLRNTPQSGESQNHPLLEGSASASSNNISGGSGLMMSHHQEYIDEDELLNMPNLLDDMARGMQVSPPRINASFSSDESPGNSDGDNLWSYTF. | 221 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca8g07441 | 220 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 26 | 190 | - | - | |
| Seca8g07441 | 220 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
| Seca8g07441 | 220 | SUPERFAMILY | DNA-binding domain | 45 | 102 | IPR016177 | GO:0003677 | |
| Seca8g07441 | 220 | Pfam | AP2 domain | 49 | 92 | IPR001471 | GO:0003700|GO:0006355 | |
| Seca8g07441 | 220 | MobiDBLite | consensus disorder prediction | 195 | 220 | - | - | |
| Seca8g07441 | 220 | MobiDBLite | consensus disorder prediction | 133 | 159 | - | - | |
| Seca8g07441 | 220 | SMART | rav1_2 | 44 | 106 | IPR001471 | GO:0003700|GO:0006355 | |
| Seca8g07441 | 220 | ProSiteProfiles | AP2/ERF domain profile. | 44 | 100 | IPR001471 | GO:0003700|GO:0006355 | |
| Seca8g07441 | 220 | MobiDBLite | consensus disorder prediction | 193 | 220 | - | - | |
| Seca8g07441 | 220 | MobiDBLite | consensus disorder prediction | 23 | 42 | - | - | |
| Seca8g07441 | 220 | Gene3D | AP2/ERF domain | 43 | 102 | IPR036955 | GO:0003700|GO:0006355 | |
| Seca8g07441 | 220 | FunFam | Ethylene-responsive transcription factor 2 | 44 | 101 | - | - | |
| Seca8g07441 | 220 | MobiDBLite | consensus disorder prediction | 8 | 22 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca8g07441 | Seca-Chr8 | 171408754 | 171409416 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca8g07441 | 45 | 218 | AP2-EREBP Transcription Factor Family | AT5G52020 | 52.571 | 3.61e-44 | 146 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | AP2/ERF-ERF | Seca8g07441 | AP2 | 5e-10 | CL0081 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca8g07441 | - | - | gmx:100776717 | 259.225 |