Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07437 ATGATATCAGGTCGCTGTGCAGCTTGCAAAAATCAAAGAAGGAAGTGCCCTTCAGATTGCATCTTCTCTCCTTACTTCCCTCCTAATGATCCTCAAAGATATGCCATTGTTCACAGAATCTATGGTGGCAGCAACGTCGGAAGAATGCTTCAGCAAATTCCACCCTATGTCCGAGCACAGGCTGCAGATTGTTTACATTATGAAGCACAATGTCGTGTTCAAGACCCTGTTTATGGTTGTTTTGGAATTATATCTCAGCTGGTTCAACAGATCCATAATACAGAAACTGAGTTAGCCAAAACCGAAGCTCTGATTAACATTCTCAAGCTCCAAGCCCAACAAGCTGAAAATGAATCAAATTTCCACGTCTTGCGCAGCACAGGGCAGTTTCAGTTTGGAAGCACTTCAAGCCAAGATTCTTGGTTCAAATGA 432 0.4282 MISGRCAACKNQRRKCPSDCIFSPYFPPNDPQRYAIVHRIYGGSNVGRMLQQIPPYVRAQAADCLHYEAQCRVQDPVYGCFGIISQLVQQIHNTETELAKTEALINILKLQAQQAENESNFHVLRSTGQFQFGSTSSQDSWFK. 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07437 143 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Seca8g07437 143 Coils Coil 84 118 - -
Seca8g07437 143 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 119 - -
Seca8g07437 143 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07437 Seca-Chr8 171371854 171372750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07437 1 121 AS2 family AT3G26660 58.678 6.65e-49 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca8g07437 LOB 1.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07437 - - gmx:100790640 191.045