Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07433 ATGATGAATGTTAATACTAAATTGAGAAAATTTTGTGGTCTGTACTCTGTAGGATTTGCTTTCATCTATATGGAAGATGAGAGAGATGCTGATGCTGCAATTCGTGCTCTTGATCGGGTAGAATTTGGTCGGAAGGGACGCAGACTTCGTGTGGAATGGACAAAGCAAGAACGTGGCATCAGAAGGCCTGCTGCTTCAAGAAGATCTACAGCTAATGGGAGACCATCAAAAACCTTATTTGTAATTAATTTTGATACATATCATACTAGAACAAGGGATTTGGAGAGGCACTTTGAGCCATATGGTAAGATAGTGAGCGTGAGGATCCGAAGGAACTTTGCTTTTGTTCAATATGAATCGGAGGATGATGCTTGCAGAGCACTGGAAGCTACAAATATGAGCAAGTTAATGGATCGGGTTATTTCAGTTGAATTTGCTGTTAAAGATGATGATGATAGGCGAAATGGATACAGCCCGGAGAGAGGCCATGATCGTCAACGCGATAGAAGTCGTGATGGGAGGCGATCACCCAGTCCTTATCGTAGAGAAAGGGGTAGTCCTGATTATGGCCGTGGACCCAGTCCATATAAGAGGGAGAGGGGCAGCCCTGACTATGGCCGTGGCCGCAGCCGTAGTAGAAGCCCCCATCGGAGAGAGCGAGCTAGCCCTGCATATGGCCGTAGAAGCCTTAGTCCATATGCAAGAGAGAGGAATGGTTCTGACCCTGTTCGTGACTCCAGCCGCAGTCCTTATCACAAAGAGCGGGGGAGAACCGACCGGTCTCACTCCCATAGTCCTGAAGGAAGAGAGAGGACAAGCCCTCAAAATGGTGGTGGCTCTAGCCGTAGTCCTTATGATACTGTAAAAACTAGCCCTGAAAATGGCCATGACTCCAGACATAGTCCTGAAGCAAAAGGAAACCCCAGCCCTTACAATGGTTATGAAGATGGAGGTAGCCCAAATACTATGCCTGAGCCCAGGGGTAGTCCCAACTATGGTGGTCCTGAAAGTCCTATGCATGAACGATACCGCAGCCAGTCACCCCCTGCTGAAGAATGA 1059 0.4769 MMNVNTKLRKFCGLYSVGFAFIYMEDERDADAAIRALDRVEFGRKGRRLRVEWTKQERGIRRPAASRRSTANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDACRALEATNMSKLMDRVISVEFAVKDDDDRRNGYSPERGHDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYKRERGSPDYGRGRSRSRSPHRRERASPAYGRRSLSPYARERNGSDPVRDSSRSPYHKERGRTDRSHSHSPEGRERTSPQNGGGSSRSPYDTVKTSPENGHDSRHSPEAKGNPSPYNGYEDGGSPNTMPEPRGSPNYGGPESPMHERYRSQSPPAEE. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07433 352 MobiDBLite consensus disorder prediction 270 291 - -
Seca8g07433 352 MobiDBLite consensus disorder prediction 238 269 - -
Seca8g07433 352 FunFam Serine/arginine-rich splicing factor RS31 69 159 - -
Seca8g07433 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 56 IPR000504 GO:0003723
Seca8g07433 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 141 IPR000504 GO:0003723
Seca8g07433 352 MobiDBLite consensus disorder prediction 150 352 - -
Seca8g07433 352 SMART rrm1_1 78 144 IPR000504 GO:0003723
Seca8g07433 352 MobiDBLite consensus disorder prediction 150 210 - -
Seca8g07433 352 SUPERFAMILY RNA-binding domain, RBD 15 150 IPR035979 GO:0003676
Seca8g07433 352 PANTHER RNA RECOGNITION MOTIF-CONTAINING 17 346 - -
Seca8g07433 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 148 IPR000504 GO:0003723
Seca8g07433 352 Gene3D - 68 158 IPR012677 -
Seca8g07433 352 Gene3D - 2 67 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07433 Seca-Chr8 171347487 171351000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07433 16 143 Eukaryotic Initiation Factors Gene Family AT4G34110 25.185 9.57e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07433 K12893 - gmx:100796509 536.569