Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07425 ATGGATGGGGATCATAGCGATTTGGGTACTGTGCATGATGGGAATGTTGATATTGGACCTGAGACATCGAATAACTTGGACTTGAATGTGGAGCAGAATTGTTGCAGCCCAAATGTTGTTAATGCTAATTGCTCTCAGTCTGGTCTTCAATCAACAAATGTACCTAGCACCAATACAGTGTTGGGAATTGGTACTGAATTTGAGTCTGATGACCATGCATACAGATTCTATAATAGGTATGCCAGATTGGTGGGTTTCAATGTTAGAAAAGATTGGACAAATAGGAGTAAGGTACATGGTCAGGTAGTGTCTAGGAAATTTACCTGCTCCAAAGAGGGATACCGTAAGAAAGACAAAAGAGATGTTAATGTGAAGAAACATCGGAAGGAAACGAGAACTGGCTGCTTGGCACATATGATTGTCACTCGCCAACTGGATGGTAAATACAAGGTCACCCATTTTGAAGCTCAACATAATCATGACAATATAAACCCTATTCCTAGCAATGCTGACATATTATTAAACTTGCAAACTGAATTTAGTGGTTCTCAAGCTGTGGAAGCTGACTCAAATAATAATTTGGGACCTAAATCAAGGTCAGCATTAAATATGATGCATAAAAAATTAGGCGCCCATGATTATCTTGATCAAGTTTCCCTGAATTATGACAATTACCTTCATTCTGTAAGGGAAAGAGATATGAGAGAAGGAGAAGCAGGGCGTTTGCTGGGTTATTTACAAAGGCAGCACTTTGAAAATCCATCATTCTTTTATGCTATACAGGTTGATGTTGATGACAAGGTAAGCAATCTATTTTGGGCTGATGACAATATGGTGGTAGATTATGACCATTTTGGTGATGTCATTTGCTTGGATACAACTTGCAGAACAAACAGAGATCTCCGACCATTTGTACAGTTTTTAGGTGTAAATCATCACAAACAAGTCTTAATCTTTGCTGCTGCTTTTTTGTATGATGATACCATTGAATCATTTAATTGGCTATTCCGAACTTTCACTAATGCAATGTCTGGGAAAAAGCCAAAGGCCATCATCACAGAACAAGAAGCTGTAATCATCGAAGCAGTCAATAAGGTTTTACCTGAAACAAACCATTGTACATGTGTATGGCAGATGTATGAGAACACTTTGAAACACCTCAGCCATTTTGTCAAGGATACCGAGTCTTTTGCAAAGGATCTATGGAGCTGTATTTATGACCCCAAGGATGAGGAAGAATTTACTCATGCTTGGGAGGCTATGCTGGAGAAGTATAATCTCCAGAAAAATGAATGGTTGAGATGGATGTATAGAGAAAGAGAGAAATGGGCTGTTGTTTTTGGACGTAATACATTTTTTGTAGACCTCAAAGGCTTTCATTTAGGTGAGATTTTGTCTCACAAATTTAGAAGTTATCTAAATTCTGAACTTGATATAGTTCAATTTTTTAACCATTTTGAAAGCGTAGTAGATGAACAACGTTACAAAGAAATAGAAGCTAGTGATGAAATGAGCAGGTGTTTGCCAAGGCTAATGGGTAATGTGGTTTTGTTGAAGCATGCAAGTGATGTTTATACACCAAGAGCATTTGAAGTATTTCAGCGAGGATATGAGAAGTCTTTAAATGTTCTTGTTAACCAACACAATAGAAATGGATCATTGTTTGAGTATAAAGCAAATACATTTGGGCATACTAAACAATACAGTGTCACCTTCAATTCTTCAGATGATACAGTTGTCTGCAGTTGTATGAAGTTTGAGCATGTTGGATTTCTGTGTAGCCATGCTCTAAAAGTCCTTGACAACAGAAACATAAAAGTAGTTCCATCTCGGTATATCTTGAAGAGATGGACAAAAGATGCAAGGTTGGGAAATCTGAGGGAGATTAGCCAATGTAAAATGCAAGATAACCCTAAGATGGCTGTAGCAAGCTGTTACAAAGATTTGTGCCACAGACTTGTCAAGTTATCTGCAAGAGCCTCTGAATCTGTGGAGGCTTATCAATTTGCTGCAAGGCAACTTGATGAAGTGATGGAAGGAGTGGAGAAAATCTTGACATTGAAAATTGAGGAAGCTCAAGTTATCACCTCAAGTACTATTGATGTAAATGCTTCAGAAAGTGAGCCTGCAGAGATCTTTCTGAATGGACATGCAACTGAGGATCAGGATGAAAGTAACAGAGTAAATGGAGAAAAAGACAGGAGAGCTACACCAGATAGGGACCATCAAACAACTGTGAATTGTAATCGAACTGATTCTGATAGAATTTTAAATATAGAAGTATCTGCACCAAATACCGCCGCCTGCATTTCAAGCCCCTCATCTGCATATGTTTCATCTCAATCCGTAACACCAAATCCCATTTTGCAGGTCATCTTTTATCATTTATCAGATATGATAGCTTATATCGTTCTGATCATATACTCATGTCATTTATTTGTGGAGATCAACAAATATATTCTCATAACTTTTAAGAGAAAATGTTCTATAATTAAAAAAAAAGTTAAGAGAATATGA 2517 0.3739 MDGDHSDLGTVHDGNVDIGPETSNNLDLNVEQNCCSPNVVNANCSQSGLQSTNVPSTNTVLGIGTEFESDDHAYRFYNRYARLVGFNVRKDWTNRSKVHGQVVSRKFTCSKEGYRKKDKRDVNVKKHRKETRTGCLAHMIVTRQLDGKYKVTHFEAQHNHDNINPIPSNADILLNLQTEFSGSQAVEADSNNNLGPKSRSALNMMHKKLGAHDYLDQVSLNYDNYLHSVRERDMREGEAGRLLGYLQRQHFENPSFFYAIQVDVDDKVSNLFWADDNMVVDYDHFGDVICLDTTCRTNRDLRPFVQFLGVNHHKQVLIFAAAFLYDDTIESFNWLFRTFTNAMSGKKPKAIITEQEAVIIEAVNKVLPETNHCTCVWQMYENTLKHLSHFVKDTESFAKDLWSCIYDPKDEEEFTHAWEAMLEKYNLQKNEWLRWMYREREKWAVVFGRNTFFVDLKGFHLGEILSHKFRSYLNSELDIVQFFNHFESVVDEQRYKEIEASDEMSRCLPRLMGNVVLLKHASDVYTPRAFEVFQRGYEKSLNVLVNQHNRNGSLFEYKANTFGHTKQYSVTFNSSDDTVVCSCMKFEHVGFLCSHALKVLDNRNIKVVPSRYILKRWTKDARLGNLREISQCKMQDNPKMAVASCYKDLCHRLVKLSARASESVEAYQFAARQLDEVMEGVEKILTLKIEEAQVITSSTIDVNASESEPAEIFLNGHATEDQDESNRVNGEKDRRATPDRDHQTTVNCNRTDSDRILNIEVSAPNTAACISSPSSAYVSSQSVTPNPILQVIFYHLSDMIAYIVLIIYSCHLFVEINKYILITFKRKCSIIKKKVKRI. 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07425 838 Pfam FAR1 DNA-binding domain 75 161 IPR004330 -
Seca8g07425 838 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 50 683 IPR031052 GO:0006355
Seca8g07425 838 Pfam MULE transposase domain 288 382 IPR018289 -
Seca8g07425 838 ProSiteProfiles Zinc finger SWIM-type profile. 568 604 IPR007527 GO:0008270
Seca8g07425 838 MobiDBLite consensus disorder prediction 717 744 - -
Seca8g07425 838 MobiDBLite consensus disorder prediction 714 744 - -
Seca8g07425 838 SMART 26again6 579 606 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07425 Seca-Chr8 171219071 171223050 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca8g07425 MULE 1.3e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07425 - K17604 gmx:100809803 1338.17