Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07424 ATGGGCTTTCTCCGCCGACTCTTCGGCCCCAAAAAACCCTCTGACGGCTCACCTTCCAAATCTGACAAAAGAAGATGGAGCTTCGTCAAACACACCATCAGAACCAAGTCACTCCCCCCTCCCCCCTCCACTGCCGCCACCCAATTTGAACCCTCCACTTCCTTGGACGCCAACAAACATGCCATAGCTGTCGCCGCCGCTACCGCTGCCGTTGCCGAGGCTGCTCTCGCCGCCGCCCACGCCGCCGCCGAGGTAGTCAGACTCACAAGCAGTGGCGTCGCTGGAAGCAGTACTAGAAGCAGGCCCGCCGTGGCGCCGCCGCCGCCTGTTGGCCATCCGCGGTGGCCGGAGGAAACCGCCGCCGTTAAGATACAATCGGCGTTCCGTGGTTACTTGGCAAGGAGGGCATTGAGAGCACTTAAAGCATTGGTGAAATTGCAAGCATTGGTTAGGGGCCACATTGTGAGAAAGCAAACTGCAGATATGCTCAGGCGCATGCAAACATTGGTGCGTCTGCAGGCCCGGGCACGTGCAAGTCGTGGGCACTTGTCAGATAATACGCGTTCTTTCAAGTCTTCACTTTCTCATTACCCTGTCCCTGAAGAATATGAACACCAACTTAGAGCCTACAATACAAAATTGGATGGATCTTCTATCCTGAAGAGATGTAGTTCAAATGCAAATTTTAGGAACATTGACTCTGACAGAGCACGGTTTGGTTCCAATTGGTTAGACCCTTGGATGGAAGACAACACATGTAGCCAAACTAGAGATGCTTCATTGAAGAATGGACACCCTGATGATGAGAAAAGTGACAAGATTCTTGAAGTAGATACTTGGAAGCCACACTTCAAGTCTCACCACAGTAGCAGCTCTTTTCAGACAGCACATTACTATATGAATTCTGATCATAATAATGACAACTTCATGACATATGAGTCTCCATCAAAACGTTCGACAAAAGCTCAAAATCAAAGTATCTCATCAAGGGAGGCTTTACTGCTAAGCTCTATGAAGTTCCAAAAAGGAAAAGAAGAAGCAACTTCACGAACTGCTGATAACAGTCCACAAGCATTTTCTGCCTCTTCTAGAACTGGAAGTGGTGCAAGGAGAGGTCCTTTTACACCTACAAGGAGTGAGTGTTCATGGGGTTTCTTCGGTGGCTATGCTGGTTATCCCAATTACATGGCAAACACTGAATCTTCTCGAGCTAAGGTTAGATCACAGAGTGCACCAAGACAAAGGTTGGAGTTTGATAGATACGGTTCTAGTAGGAGACCTATTCATCATCATCTTCAGGGTATTTGGGATGTGGGGCCTAATTCAGACAGAGATTCTGATTCAAGGAGCAGAGTCTCAGCTGTCTCGAGCCGTTTGAACAGAATTGGGAGTACCAATTTAAGGTGA 1407 0.4854 MGFLRRLFGPKKPSDGSPSKSDKRRWSFVKHTIRTKSLPPPPSTAATQFEPSTSLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSSGVAGSSTRSRPAVAPPPPVGHPRWPEETAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTADMLRRMQTLVRLQARARASRGHLSDNTRSFKSSLSHYPVPEEYEHQLRAYNTKLDGSSILKRCSSNANFRNIDSDRARFGSNWLDPWMEDNTCSQTRDASLKNGHPDDEKSDKILEVDTWKPHFKSHHSSSSFQTAHYYMNSDHNNDNFMTYESPSKRSTKAQNQSISSREALLLSSMKFQKGKEEATSRTADNSPQAFSASSRTGSGARRGPFTPTRSECSWGFFGGYAGYPNYMANTESSRAKVRSQSAPRQRLEFDRYGSSRRPIHHHLQGIWDVGPNSDRDSDSRSRVSAVSSRLNRIGSTNLR. 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07424 468 ProSiteProfiles IQ motif profile. 141 168 IPR000048 GO:0005515
Seca8g07424 468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 162 IPR027417 -
Seca8g07424 468 ProSiteProfiles IQ motif profile. 117 145 IPR000048 GO:0005515
Seca8g07424 468 MobiDBLite consensus disorder prediction 91 115 - -
Seca8g07424 468 MobiDBLite consensus disorder prediction 452 468 - -
Seca8g07424 468 SMART iq_5 139 160 IPR000048 GO:0005515
Seca8g07424 468 SMART iq_5 116 138 IPR000048 GO:0005515
Seca8g07424 468 MobiDBLite consensus disorder prediction 341 375 - -
Seca8g07424 468 MobiDBLite consensus disorder prediction 403 468 - -
Seca8g07424 468 MobiDBLite consensus disorder prediction 309 328 - -
Seca8g07424 468 PANTHER IQ-DOMAIN 5-RELATED 18 441 - -
Seca8g07424 468 MobiDBLite consensus disorder prediction 350 372 - -
Seca8g07424 468 MobiDBLite consensus disorder prediction 410 432 - -
Seca8g07424 468 MobiDBLite consensus disorder prediction 1 50 - -
Seca8g07424 468 Gene3D - 117 169 - -
Seca8g07424 468 Pfam Protein of unknown function (DUF4005) 355 416 IPR025064 -
Seca8g07424 468 Pfam IQ calmodulin-binding motif 120 138 IPR000048 GO:0005515
Seca8g07424 468 Pfam IQ calmodulin-binding motif 141 158 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07424 Seca-Chr8 171207540 171212160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07424 1 417 IQD Protein Family AT5G62070 47.991 2.01e-69 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07424 - - gmx:100783694 566.614