Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07420 ATGGGGTTTGAGGTTTTGACTAACAGCAAGAGTGGGAACAGTTGCATTGAGGGTGCAAGAGTTGTGATTGATATTTCTCAACCCATTTCCAGTTCAATGCAAAATTCATCTTCCTTCTTCAACACTCAAAGAAAAATGGAGGGGCATAGTGAGATGGGTCTCATTGGGGATAGTTTAGACAATAGCTTGATGGGGAGAATGAGGGACGATGAGTATGAAAGCCGTTCTGGAAGTGATAACTTTGAAGGCGTATCTGGTGATGATCAGGATGCTGGTGATGATCAACCCCAGAGGAAGAAGAGATACCATAGACACACTCCTCATCAAATTCAAGAGCTTGAGGCTTTCTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGGTTAGATCTTAGTAGGAGGCTTGGCTTGGAGAATAAGCAAGTCAAGTTCTGGTTTCAGAATAGGCGAACCCAAATGAAGACCCAGCTGGAACGCCATGAGAACCTAATGCTTAGGCAGGAAAATGAGAAGCTCAGAGCTGAGAACAGTTTGATGAAGGAAGCCATGTCAAATCCAGTATGTAACAGCTGTGGTGGCCCAGCCATTCCTGGCCAAATTTCATTTGAGGAACACCAGATTAGAATTGAAAATGCTCGCCTGAAGGATGAATTGAACCGTATATGTGCCTTAGCAAACAAGTTCCTTGGCAAACCAATCTCATCATTGACCGGTCCCATGGCTCTCCCAACCACAAATTCTGGTCTAGAACTTGGTATTGGAAGGAATGGAATTGGTGGTTCAAGCACCCTTGGCACTCCCTTGCCAATGGGGCTTGATTTGGGGGAAGGAGTCATGGGCACTCAACCTGCAATTCCTGGGATTCGGTCACCAATGGGAATGATAGGAAATGAAGTTCAGATTGAGAGATCAATGCTTATAGATCTTGCATTGGCTGCTATGGAGGAATTACTCAAGATGGCTCAGAATGATAGCCCTCTCTGGATTAAGAGTTTGGATGGCGAGAGAGAAATATTAAACCATGAGGAGTATGCAAGGTTGTTTTCTCCTTGTATTGGTCCAAAACCAACTGGTTATGTAACTGAAGCTACAAGAGAAACTGGGATAGTGATAATCAACAGTTTAGCCCTTGTGGAAACTTTAATGGATGCGAATCGATGGGCAGAGATGTTTCCCTCTATGATTGCTAGAGCTGTCAACCTTGATGTTATATCTAATGGCATGGGTGGAACCAGAAATGGTGCTTTACAACTGATGCATGCTGAGGTTCAATTGCTTTCACCACTTGTCCCTGTTCGGCAAGTGAGATTCCTCCGGTTCTGTAAGCAACATGTAGAAGGTGTGTGGGCAGTGGTTGATGTTTCTGTTGAGATGGGTCATGATGCTGCTAATGGACAGCCATTCATGAGCTGTAGGAGGCTTCCTTCAGGCTGTATTGTGCAGGATATGCCCAATGGTTACTCCAAGGTTACTTGGCTTGAGCATTGGGAGTATGATGAGAGTGTTGTCCACCAACTCTATCGGCCATTGCTTAATTGTGGTGTTGGATTTGGTGCTCATAGATGGATTGCCACTCTCCAAAGGCAGTGTGAATGCTTGGCTATCCTCATGTCCTCTTCCATCTCAACTGATGATCACACAGCATTGAGCCAAGCTGGTAGGAGAAGCATGTTGAAGCTGGCACAACGCATGACCGGTAACTTCTGCTCTGGTGTTTGTGCTTCCTCAGCTCGCAAGTGGGACATCCTTCAGATGGCGACCCTGAGTGATGACATGAGAGTGATGACCAGGAAAAATGTGGATGACCCTGGCGAGCCTCCAGGGATCGTGCTCAGTGCTGCAACTTCTGTTTGGATGCCGGTTTCACGCCAGAGACTGTTTGATTTTCTGCGTGATGAGAGACTGAGAAGTGAATGGGACATTTTGTCCAACGGTGGACCAATGCAGGAGATGGTCCATATTGCCAAAGGACAAGGACATGGAAATTGCGTTTCTCTCCTCCGGGCCAGTGCTGTGAATGCGAATGATAGCAGCATGCTGATTCTGCAAGAGACATGGATGGATGCATCGTGTTCCGTGGTGGTATATGCACCGGTTGATGTGCAATCATTGAATGTGGTGATGAGTGGTGGAGATTCTGCATATGTTGCACTCTTGCCTTCAGGCTTTGCTATTCTACCTGACGGTCATTGTGGGCCAAATAACAGTTGCAATGGGACTTTACAAAAAGGTGGTGCTACTGATGGTGGTGGAAGCTTGCTCACAGTTGGTTTTCAAATTCTGGTGAATAGCCTTCCAACGGCTAAGCTCACAGTGGAGTCGGTTGATACTGTGAATAACCTGATCTCATGCACCATTCAGAAGATCAAAGGTGCACTCAGAGTTGCGTAA 2391 0.4613 MGFEVLTNSKSGNSCIEGARVVIDISQPISSSMQNSSSFFNTQRKMEGHSEMGLIGDSLDNSLMGRMRDDEYESRSGSDNFEGVSGDDQDAGDDQPQRKKRYHRHTPHQIQELEAFFKECPHPDEKQRLDLSRRLGLENKQVKFWFQNRRTQMKTQLERHENLMLRQENEKLRAENSLMKEAMSNPVCNSCGGPAIPGQISFEEHQIRIENARLKDELNRICALANKFLGKPISSLTGPMALPTTNSGLELGIGRNGIGGSSTLGTPLPMGLDLGEGVMGTQPAIPGIRSPMGMIGNEVQIERSMLIDLALAAMEELLKMAQNDSPLWIKSLDGEREILNHEEYARLFSPCIGPKPTGYVTEATRETGIVIINSLALVETLMDANRWAEMFPSMIARAVNLDVISNGMGGTRNGALQLMHAEVQLLSPLVPVRQVRFLRFCKQHVEGVWAVVDVSVEMGHDAANGQPFMSCRRLPSGCIVQDMPNGYSKVTWLEHWEYDESVVHQLYRPLLNCGVGFGAHRWIATLQRQCECLAILMSSSISTDDHTALSQAGRRSMLKLAQRMTGNFCSGVCASSARKWDILQMATLSDDMRVMTRKNVDDPGEPPGIVLSAATSVWMPVSRQRLFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGHGNCVSLLRASAVNANDSSMLILQETWMDASCSVVVYAPVDVQSLNVVMSGGDSAYVALLPSGFAILPDGHCGPNNSCNGTLQKGGATDGGGSLLTVGFQILVNSLPTAKLTVESVDTVNNLISCTIQKIKGALRVA. 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07420 796 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 95 793 IPR042160 -
Seca8g07420 796 CDD START_ArGLABRA2_like 303 531 - -
Seca8g07420 796 SUPERFAMILY Homeodomain-like 85 156 IPR009057 -
Seca8g07420 796 SUPERFAMILY Bet v1-like 560 790 - -
Seca8g07420 796 Gene3D - 86 172 - -
Seca8g07420 796 SMART START_1 308 532 IPR002913 GO:0008289
Seca8g07420 796 MobiDBLite consensus disorder prediction 70 106 - -
Seca8g07420 796 Pfam Homeodomain 99 154 IPR001356 GO:0003677
Seca8g07420 796 SUPERFAMILY Bet v1-like 301 532 - -
Seca8g07420 796 CDD homeodomain 98 156 IPR001356 GO:0003677
Seca8g07420 796 ProSiteProfiles START domain profile. 299 535 IPR002913 GO:0008289
Seca8g07420 796 FunFam Homeobox-leucine zipper protein HDG1 85 172 - -
Seca8g07420 796 ProSiteProfiles 'Homeobox' domain profile. 96 156 IPR001356 GO:0003677
Seca8g07420 796 Pfam START domain 309 532 IPR002913 GO:0008289
Seca8g07420 796 SMART HOX_1 97 160 IPR001356 GO:0003677
Seca8g07420 796 FunFam Homeobox-leucine zipper protein GLABRA 2 308 531 - -
Seca8g07420 796 Coils Coil 150 185 - -
Seca8g07420 796 ProSitePatterns 'Homeobox' domain signature. 131 154 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07420 Seca-Chr8 171164080 171169415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07420 46 793 Homeobox Transcription Factor Family AT3G61150 62.269 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca8g07420 START 1.4e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07420 K09338 - gmx:100785102 1385.93