Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07416 ATGGCTTTTCCCTTCAACCTTGTACTCTTGTACCTTGTCATGTTCCACCTCTGGTTCTCCATTGCAGATGACAGTGGACAAAACCCAGAAAAAATTTCCCTCCTTTCCTTCAAAGAAGCTCTCCAAAACCCTCACGTTTTAGCATCATGGCACTCTGCAACCCCGCACTGCAACTGGGTTGGCGTCACTTGCCAACTGGGCCGAGTCACCTCGCTCTCTCTTCCTTCTCGCTACCTCAGAGGCACACTTTCTTTGTCTCTCTCCTCTCTTTCCTCTCTCACCGTCCTCAACCTCGATGACAATCAGTTTTCCGGCGAAATCCCCGGCGAACTCGGTGAGTTGGTTCAGCTGCAAGCTCTCAGACTCGGTTCCAACTCGTTCGCCGGAAAAATACCACCGGAGTTGGGACTCTTGACAAACTTGCGCACACTCGACCTCGCCGGCAATGCCCTCGCCGGAGAGATACCGGAGAGTATCGGAAACTTGACCCGGCTTCAGTTCTTGGACTTGAGCAACAACTTTCTCTCAGGTTCTCTTCCGATAACTCTCTTCACCGGAACTCAGTCTTTGATATCTGTTGATATCTCGAACAACTCGTTTTCCGGTGCACTGCCGCCGGAAATCGGGAACTGGAAGAACCTCACTGCACTTTACGTGGGGATTAACAAGTTGTCAGGCACACTGCCTAAGGAAATTGGAGAGCTTTCGAAGCTTGAAATTTTCTATTCCCCTTCCTGTTTTATTGAAGGGCCATTGCCCGAGGAAATGGCAAAGCTCGATTCGTTGACAAAGCTTGACCTTTCTTACAACCCCTTGAGGTGTTCAATCCCAAAGTTTATTGGGAAGTTACAAAATTTGAAAATATTGGACCTTGTCTTTGCTCAGCTTAATGGGTCAGTGCCAGCTGAGCTTGGAAATTGTAAAACCCTGAGGTCTGTTATGCTTTCTTTCAATTCACTTTCTGGGTCACTGCCTGAGGAGCTTTCTGAGCTCCCCATAATCACTTTTTCAGCTGAAAAGAATCAGCTGCATGGACCTTTGCCTTCTTGGCTTGGGAAGTGGACTAATGTTGATTCTCTCTTGCTTTCTGCCAACCGTTTTTCTGGGGTGATTCCACCTGAGCTTGGGAATTGCTCTGTGATGCAGCATCTTAGTTTGAGCAGCAACTTGTTAACAGGTCCTATACCTGAAGAGCTTTGTAATGCTGCCTCACTTTTGGAGATTGATCTTGATGATAACTTCCTTTCTGGTACAATTGAGAAAGCATTTGTCAAGTGTAAGAACCTTACCCAGTTGGTTTTGATGAACAATCAGATTGTTGGTTCTATACCACAGTACCTTTCAGAGCTTCCCTTGATGGTGCTGGACCTAGACTCCAACAACTTTAGTGGAAAAATACCTTCTAGTCTCTGGAATTCTTCCTCACTGATGGAATTCTCTGCTGCCAATAACCGTTTGGAGGGTTCTCTTCCTGTGGAGATAGGGAATGCAGTTGTTCTTCAGAGGCTTGTTGTTAGCAATAATCGATTGACAGGTACTATACCTAAGGAAATTGGAAGTCTCACAAGTCTTTCAGTTCTTAATTTGAATGGAAATATGCTTGAAGGCAATATTCCAACTGAGCTTGGTCAGTGCATTTCCCTTACTACATTGGACCTTGGTAACAATCGACTCAATGGGTCTATTCCTGAGAAACTGGTGGACCTAAGCCAATTACAGTGCCTAGTTCTTTCTCACAATAATCTGTCTGGGTCTATTCCTACCAAGAACCAATCTTCATATTTTCGACAACTCACCATCCCTGATTTGAGCTTTGTTCAACACCTTGGTGTATTTGATCTTTCTCACAATAGATTGTCTGGTACCATACCTCATGAACTGGGGAGCTGTGTAGTGGTTGTGGATCTATTACTCAGTAACAACTTGCTTTCTGGGAGCATTCCAAGATCACTCTCACGCTTAAAAAATCTAACAACTTTGGATTTGTCTAGCAACTTGTTATCAGGTTTCATTCCACCAGAGCTTGGAGATGCACTCAAACTTCAAGGTTTATATCTGGGACAGAATAAACTCTCAGGTACCATCCCTGCAAGTTTTGGAAATCTGAGTAGTTTGGTGAAGCTGAATTTGACAGGAAATAAGTTGTTTGGCCCAATTCCAAATAGTTTTGGGAACATGAAGGAGTTGACTCACTTGGACTTAAGCTCTAATGAGCTCAGTGGTGAGCTTCCATCCTCTCTGTCAGGTGTGCAAAGCCTTGTGGGGCTTTACGCACAGAAGAACAGACTTTCTGGCCAAGTAGGGGAGCTCTTCTCAAATTCCATGACATGGAGGATTGAGACAATGAATTTGAGTGATAATTGTTTCACTGGGAACTTGCCACGGTCTTTAGGAAATCTTTCCTATTTGACAAATTTGGATCTTCATCAAAATTTGTTAAGTGGAGAGATTCCTTTAGACCTTGGGAATCTAATGCAATTGGAGTATTTTGATGTTTCAGGTAATCACCTATCTGGAAAGATCCCAGAGAAGTTATGCAGCCTTGTTAATCTAAATTACTTAGATTTGTCTCAAAACAGATTGGAAGGGCCTATACCTAGAAGTGGTATTTGCCAGAACCTATCCAGAGCTAGATTTTTGGGGAATAGAAATCTGTGTGGCCAGAATTTGGGTATAAATTGTCAGATCAAAAGCATTGATAGAACTGCATTGTTTAATGTATGGAGGCTTGCTGGAATTGCCATTACAATCATATTAATTACTATAAGCATTGCTTTTGTTCTGCATAGATGGATTATCAGGAGGCAAAATGATCCAGAGGAACTTGAGGAGCGCAAACTAAACAGTTATGTGGATCAAAATCTTTATTTCTTAAGTAGTAGCAGATCAAAGGAACCTTTGAGTATCAATGTAGCAATGTTTGAACAGCCTCTTCTGAAATTAACTTTGGTTGACATCCTTGAAGCTACAGACAACTTCAGCAAGGCAAATATAATTGGAGATGGAGGTTTTGGAACTGTGTACAAGGCCACTCTACCTAATGGAAAAACAGTTGCTGTGAAGAAGCTTAGTGAAGCTAAAACACAGGGTCATCGCGAATTCATGGCTGAAATGGAAACCTTGGGCAAGGTGAAGCATCAAAACCTTGTTGCATTGCTTGGATATTGCTCATTGGGTGAAGAGAAACTCCTTGTTTATGAATACATGGTAAATGGGAGCTTAGATCTTTGGTTGAGAAACAGAACTGGGGCCCTTGAAATCCTTGACTGGAACAAACGTTACAAGATTGCAACTGGTGCAGCACGAGGACTAGCTTTCCTTCATCATGGTTTCATACCCCACATCATTCACAGGGATGTTAAAGCTAGCAACATTTTACTGAATGAAGATTTTGAACCAAAAGTTGCTGACTTTGGACTTGCAAGACTGATCAGTGCCTGTGAGACACATATCACCACTGATGTAGCTGGAACATTTGGTTACATTCCACCAGAGTATGGGCAGAGTGGAAGGTCCACCACAAGAGGAGATGTGTACAGTTTTGGTGTCATTTTGCTTGAATTGGTGACAGGAAAAGAACCAACTGGACCAGATTTCAAAGAGATTGAAGGTGGGAACTTGGTTGGATGGGTTAGTCAGAAGATCAAGAAGGGGCAAGCTGCTGATGTTCTTGATCCAACAGTTCTTGATGCAGATTCAAAGCAGATGATGCTTCAAATGCTGCAGATTGCTTGTGTATGTCTCTCTGATAATCCTGCAAACAGGCCTACCATGCTTCAAGTTCACAAATTCTTGAAGGGGATTAAAGGAGGAGAGTAG 3819 0.4307 MAFPFNLVLLYLVMFHLWFSIADDSGQNPEKISLLSFKEALQNPHVLASWHSATPHCNWVGVTCQLGRVTSLSLPSRYLRGTLSLSLSSLSSLTVLNLDDNQFSGEIPGELGELVQLQALRLGSNSFAGKIPPELGLLTNLRTLDLAGNALAGEIPESIGNLTRLQFLDLSNNFLSGSLPITLFTGTQSLISVDISNNSFSGALPPEIGNWKNLTALYVGINKLSGTLPKEIGELSKLEIFYSPSCFIEGPLPEEMAKLDSLTKLDLSYNPLRCSIPKFIGKLQNLKILDLVFAQLNGSVPAELGNCKTLRSVMLSFNSLSGSLPEELSELPIITFSAEKNQLHGPLPSWLGKWTNVDSLLLSANRFSGVIPPELGNCSVMQHLSLSSNLLTGPIPEELCNAASLLEIDLDDNFLSGTIEKAFVKCKNLTQLVLMNNQIVGSIPQYLSELPLMVLDLDSNNFSGKIPSSLWNSSSLMEFSAANNRLEGSLPVEIGNAVVLQRLVVSNNRLTGTIPKEIGSLTSLSVLNLNGNMLEGNIPTELGQCISLTTLDLGNNRLNGSIPEKLVDLSQLQCLVLSHNNLSGSIPTKNQSSYFRQLTIPDLSFVQHLGVFDLSHNRLSGTIPHELGSCVVVVDLLLSNNLLSGSIPRSLSRLKNLTTLDLSSNLLSGFIPPELGDALKLQGLYLGQNKLSGTIPASFGNLSSLVKLNLTGNKLFGPIPNSFGNMKELTHLDLSSNELSGELPSSLSGVQSLVGLYAQKNRLSGQVGELFSNSMTWRIETMNLSDNCFTGNLPRSLGNLSYLTNLDLHQNLLSGEIPLDLGNLMQLEYFDVSGNHLSGKIPEKLCSLVNLNYLDLSQNRLEGPIPRSGICQNLSRARFLGNRNLCGQNLGINCQIKSIDRTALFNVWRLAGIAITIILITISIAFVLHRWIIRRQNDPEELEERKLNSYVDQNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATDNFSKANIIGDGGFGTVYKATLPNGKTVAVKKLSEAKTQGHREFMAEMETLGKVKHQNLVALLGYCSLGEEKLLVYEYMVNGSLDLWLRNRTGALEILDWNKRYKIATGAARGLAFLHHGFIPHIIHRDVKASNILLNEDFEPKVADFGLARLISACETHITTDVAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVSQKIKKGQAADVLDPTVLDADSKQMMLQMLQIACVCLSDNPANRPTMLQVHKFLKGIKGGE. 1273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07416 1272 FunFam serine/threonine-protein kinase BRI1-like 2 1069 1272 - -
Seca8g07416 1272 Gene3D Phosphorylase Kinase; domain 1 955 1068 - -
Seca8g07416 1272 SUPERFAMILY Protein kinase-like (PK-like) 974 1265 IPR011009 -
Seca8g07416 1272 Pfam Leucine Rich Repeat 261 283 IPR001611 GO:0005515
Seca8g07416 1272 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515
Seca8g07416 1272 Pfam Leucine Rich Repeat 656 675 IPR001611 GO:0005515
Seca8g07416 1272 Pfam Leucine Rich Repeat 729 749 IPR001611 GO:0005515
Seca8g07416 1272 Pfam Leucine Rich Repeat 705 725 IPR001611 GO:0005515
Seca8g07416 1272 SUPERFAMILY L domain-like 337 624 - -
Seca8g07416 1272 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Seca8g07416 1272 SUPERFAMILY L domain-like 595 890 - -
Seca8g07416 1272 Gene3D Ribonuclease Inhibitor 603 675 IPR032675 -
Seca8g07416 1272 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1115 1127 IPR008271 GO:0004672|GO:0006468
Seca8g07416 1272 Gene3D Ribonuclease Inhibitor 676 775 IPR032675 -
Seca8g07416 1272 Gene3D Ribonuclease Inhibitor 335 602 IPR032675 -
Seca8g07416 1272 Gene3D Ribonuclease Inhibitor 184 334 IPR032675 -
Seca8g07416 1272 SMART LRR_typ_2 138 161 IPR003591 -
Seca8g07416 1272 SMART LRR_typ_2 654 678 IPR003591 -
Seca8g07416 1272 SMART LRR_typ_2 848 873 IPR003591 -
Seca8g07416 1272 SMART LRR_typ_2 702 725 IPR003591 -
Seca8g07416 1272 SMART LRR_typ_2 162 186 IPR003591 -
Seca8g07416 1272 SMART LRR_typ_2 726 750 IPR003591 -
Seca8g07416 1272 SMART LRR_typ_2 606 630 IPR003591 -
Seca8g07416 1272 SMART LRR_typ_2 259 283 IPR003591 -
Seca8g07416 1272 SMART LRR_typ_2 90 114 IPR003591 -
Seca8g07416 1272 SMART LRR_typ_2 569 592 IPR003591 -
Seca8g07416 1272 SMART LRR_typ_2 521 545 IPR003591 -
Seca8g07416 1272 ProSitePatterns Protein kinases ATP-binding region signature. 999 1022 IPR017441 GO:0005524
Seca8g07416 1272 FunFam Leucine-rich repeat receptor protein kinase EMS1 335 595 - -
Seca8g07416 1272 Gene3D Ribonuclease Inhibitor 776 895 IPR032675 -
Seca8g07416 1272 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 602 898 - -
Seca8g07416 1272 FunFam leucine-rich repeat receptor protein kinase EMS1 185 334 - -
Seca8g07416 1272 Gene3D Ribonuclease Inhibitor 27 183 IPR032675 -
Seca8g07416 1272 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 27 180 - -
Seca8g07416 1272 SMART serkin_6 993 1265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07416 1272 PRINTS Leucine-rich repeat signature 729 742 - -
Seca8g07416 1272 PRINTS Leucine-rich repeat signature 848 861 - -
Seca8g07416 1272 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 338 423 - -
Seca8g07416 1272 ProSiteProfiles Protein kinase domain profile. 993 1265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07416 1272 FunFam serine/threonine-protein kinase BRI1-like 2 954 1068 - -
Seca8g07416 1272 Pfam Protein tyrosine and serine/threonine kinase 996 1265 IPR001245 GO:0004672|GO:0006468
Seca8g07416 1272 SMART LRR_sd22_2 211 237 - -
Seca8g07416 1272 SMART LRR_sd22_2 726 752 - -
Seca8g07416 1272 SMART LRR_sd22_2 848 876 - -
Seca8g07416 1272 SMART LRR_sd22_2 138 164 - -
Seca8g07416 1272 SMART LRR_sd22_2 800 821 - -
Seca8g07416 1272 SMART LRR_sd22_2 654 675 - -
Seca8g07416 1272 SMART LRR_sd22_2 678 704 - -
Seca8g07416 1272 SMART LRR_sd22_2 545 571 - -
Seca8g07416 1272 SMART LRR_sd22_2 259 284 - -
Seca8g07416 1272 Gene3D Transferase(Phosphotransferase) domain 1 1069 1271 - -
Seca8g07416 1272 SUPERFAMILY L domain-like 43 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07416 Seca-Chr8 171095403 171099221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07416 30 1268 Receptor kinase-like Gene Family AT5G07280 60.723 0.0 1445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Seca8g07416 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07416 - - gmx:100780446 2136.69