Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07415 ATGGCTCCGCCGGTGGAACATAACGGCGACTCCTCGGCCGGCGAGTCTCAGAGATCCACTCCGACGCCGTTTCTCACCAAGACCTACCAGCTCGTCGATGACCACACCATCGATGACGTTATTTCCTGGAACGATGCTGGATCATCCTTCATCGTCTGGAACCCCACCGTTTTCGCCAGGGATTTGCTTCCAAAATATTTCAAACACAACAATTTCTCCAGCTTTGTTCGCCAACTCAACACTTATGTAGGATTCAGAAAAGTTGTCCCTGATCGGTGGGAATTCTCGAACGAGTGTTTCCGAAGAGGCGAGAAACGGCTTCTCTGTGAGATTCAGCGGCGTAAGATCCTTTCACCATCGCCTCCGGCAGTTTCGAATGTTACCGGAGCGGTTCCCTTGCCGTTGCCGCTTGCTGCGATTCCGACGGCGAAGCCGATCGTGTCGCCGTCAAACTCAGGGGAGGAGCAGGTGATTTCGTCGAACTCGTCGCCGACGGAGCTGTTGGATGAGAACGAGAGGCTGAAGAGGGAGAACTTTCAGTTGACGAAGGAATTGGCGGAGATGAGATCGCTCTGCAACAGTATACTCAATCTCATGTCGAGTTACACGAACGCTCAACCGGACGGCGGTGCACAAGGTAGGGAGTGTGATTCCATGGCGACGAAGACTCTTCATTTGATGCCGGCGAAGCGGTGCTCAGGCGAGGAAGCAGCGGCAATGGCGGTGGAAGAGATGAACCCGAAACTGTTTGGGGTGGCGATTGGTACGAAGCGAGCGAGAGAGGAAGGGCGGGGAGCCGAGGATGATACAGTGTTGAGCCTGCATCAACTGGTTCATGCAGACGTGAAATCAGAGCCGTGTGTTTGTTTGGGCGGCGAAAATAGGAAAACGGTGTGGCCTGTGGATCAATGA 912 0.5406 MAPPVEHNGDSSAGESQRSTPTPFLTKTYQLVDDHTIDDVISWNDAGSSFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYVGFRKVVPDRWEFSNECFRRGEKRLLCEIQRRKILSPSPPAVSNVTGAVPLPLPLAAIPTAKPIVSPSNSGEEQVISSNSSPTELLDENERLKRENFQLTKELAEMRSLCNSILNLMSSYTNAQPDGGAQGRECDSMATKTLHLMPAKRCSGEEAAAMAVEEMNPKLFGVAIGTKRAREEGRGAEDDTVLSLHQLVHADVKSEPCVCLGGENRKTVWPVDQ. 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07415 303 SMART hsfneu3 20 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca8g07415 303 Gene3D - 16 115 IPR036388 -
Seca8g07415 303 Pfam HSF-type DNA-binding 24 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca8g07415 303 MobiDBLite consensus disorder prediction 1 22 - -
Seca8g07415 303 SUPERFAMILY "Winged helix" DNA-binding domain 20 114 IPR036390 -
Seca8g07415 303 FunFam Heat stress transcription factor B-4 16 115 - -
Seca8g07415 303 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca8g07415 303 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca8g07415 303 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca8g07415 303 MobiDBLite consensus disorder prediction 147 166 - -
Seca8g07415 303 Coils Coil 171 191 - -
Seca8g07415 303 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 206 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07415 Seca-Chr8 171066064 171067410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07415 2 263 HSF AT5G62020 51.557 2.72e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca8g07415 HSF_DNA-bind 3.4e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07415 K09419 - gmx:100780987 409.453