Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07409 ATGGATGACCTAATTCACTCAAAGTTGAACCTCAACCCAATTCTCTTCCTCCTCCTGTTTCCTCGCACTGAGGCACAGTCACCAATGCAGCCAGCATCTCCTTTTGCCAACCACACCATTTGGGATGTCTCTTCCATGGTCATCATCATTGGAGCCTTCATTGCAACTTTCCTCTTGGTAACCGTCTTCTCAATTTTCCTCCGTCACTGTGGCCACTCACACCCCACCTCTTCTCAGAATCACAGTGGCATCCACCCTCAAATCCTCCAAACCTTCCCCATCCTCTTCTACTCCTCCATCAACAACCACCTCAAACGAGAAGACCCTCTTCAATGCGCCGTGTGTCTCTCCGACTTTAACCACCACGACACTCTCCGTCTCCTCCCTCAATGCAACCATGTCTTCCACCCTCCTTGCATCGATGCCTGGCTTTCTTCCCATGTCACCTGCCCTGTTTGTCGCGCCATTCTCGACCAACCCCTGCATTCTGTTGAGGGTGAAGGTTCTACGAGTGAAGGTGACGGTGAAGGGCGGAGGAATTGTGATGAAGAGGATAAAGGGGTGGTGGAACGTGCGTCAAAATCGAAGCTTTTGAGGTCGAATTCGACGGGTCATTCGGTGGTGGAAGATGTGGAGAGGTATACGCTGAGGTTACCGGAGGATGTGAAGAAGAGTATTATGGTGAACCATGGGGTGATGTTGCAGCGTTCGGCTAGCTACAACTTTGTTGGGAGCTCTATGAAAGGGTTGTGTTGGAGTGACAGTGATGGGAGTAGCAGAGGTAAGAGGAACGGCATTGGGATGATGGTAAAAAATCTCAAGTGA 825 0.5042 MDDLIHSKLNLNPILFLLLFPRTEAQSPMQPASPFANHTIWDVSSMVIIIGAFIATFLLVTVFSIFLRHCGHSHPTSSQNHSGIHPQILQTFPILFYSSINNHLKREDPLQCAVCLSDFNHHDTLRLLPQCNHVFHPPCIDAWLSSHVTCPVCRAILDQPLHSVEGEGSTSEGDGEGRRNCDEEDKGVVERASKSKLLRSNSTGHSVVEDVERYTLRLPEDVKKSIMVNHGVMLQRSASYNFVGSSMKGLCWSDSDGSSRGKRNGIGMMVKNLK. 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07409 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 158 IPR013083 -
Seca8g07409 274 SMART ring_2 112 153 IPR001841 -
Seca8g07409 274 FunFam E3 ubiquitin-protein ligase ATL6 72 160 - -
Seca8g07409 274 MobiDBLite consensus disorder prediction 169 193 - -
Seca8g07409 274 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Seca8g07409 274 CDD RING-H2_EL5-like 111 154 - -
Seca8g07409 274 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 28 236 - -
Seca8g07409 274 MobiDBLite consensus disorder prediction 164 202 - -
Seca8g07409 274 Pfam Ring finger domain 111 154 IPR001841 -
Seca8g07409 274 SUPERFAMILY RING/U-box 103 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07409 Seca-Chr8 171019748 171020572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07409 13 227 Rapid Response to Elicitors AT3G05200 36.863 7.15e-42 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07409 K10664 - gmx:100809056 193.356