Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07402 ATGAGGTGCCAGCCATTAGAAAAGGCAAAACCAAAACACAGGAAGGGCTTATGGTCCCCTGAAGAAGACCATAAGCTCAGAAACTATATCCTTAAGCATGGTCATGGCTGCTGGAGTTCTGTCCCCATTAAGGCAGGCTTGCAAAGGAATGGAAAGAGCTGCAGATTAAGGTGGATTAACTATCTAAGGCCAGGATTAAAGAGAGGGAAGTTCAACAAACAGGAGGAGGAGACAATCCTGGCCCTTCACCACATGCTAGGCAACAAGTGGTCACAGATAGCACAACATTTGGCAGGAAGGACAGACAATGAGATAAAAAACTACTGGCATTCATATTTGAAAAAGAGAGTGGCCAAAACTAAGGAAATGGATTCTCAAAAACAAATTCAGTATGCTAGCTCAAGCTCAGATACTATGGACTCTTCACTCTCTGTCCAAAAACTTGTTACTCAAGGCCCACAGAATTATAACTTGTCCAAAGAAGCTTATCAAAGCTCCTTACCAAAACTGTTATTTGCTGAATGGCTTTCCCCAGATCAGGTACATGGTGGGAACTCAGCAAATTCAGTTGACTCTTTGGCCTTGAGGAATGGATTTGATCAAAATTCAACTTTTCAAGAAGCTGCAATGCATGATATGTCAGAGGGACCCTTTGGTGGAGAGTATCATAATAGTCTAATTAACATTTCAACCCCTGAGATGTTCAATTCACAGCTGAAGTTTGCAAATCAAATGGTGGGAAATGGCTTCATCCATTGCATACCTGGGGTTGAGTTTAGTACCAATTTCAGCCTCAGCAATGATGCAATGTACGTATGA 819 0.42 MRCQPLEKAKPKHRKGLWSPEEDHKLRNYILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGKFNKQEEETILALHHMLGNKWSQIAQHLAGRTDNEIKNYWHSYLKKRVAKTKEMDSQKQIQYASSSSDTMDSSLSVQKLVTQGPQNYNLSKEAYQSSLPKLLFAEWLSPDQVHGGNSANSVDSLALRNGFDQNSTFQEAAMHDMSEGPFGGEYHNSLINISTPEMFNSQLKFANQMVGNGFIHCIPGVEFSTNFSLSNDAMYV. 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07402 272 FunFam MYB transcription factor 70 141 - -
Seca8g07402 272 CDD SANT 18 62 IPR001005 -
Seca8g07402 272 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Seca8g07402 272 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Seca8g07402 272 Gene3D - 15 67 - -
Seca8g07402 272 SMART sant 67 115 IPR001005 -
Seca8g07402 272 SMART sant 14 64 IPR001005 -
Seca8g07402 272 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Seca8g07402 272 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Seca8g07402 272 Gene3D - 69 140 - -
Seca8g07402 272 PANTHER MYB DOMAIN PROTEIN 55 8 217 - -
Seca8g07402 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Seca8g07402 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Seca8g07402 272 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Seca8g07402 272 CDD SANT 70 113 IPR001005 -
Seca8g07402 272 FunFam MYB transcription factor 12 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07402 Seca-Chr8 170947991 170950566 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07402 7 201 MYB Transcription Factor Family AT5G52260 52.830 5.49e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g07402 Myb_DNA-binding 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07402 K09422 - gmx:778167 449.514