Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07398 ATGGGTAAAGCACCCTGTTGTGACAAACATGGAGTCAGAAGGGGAGCTTGGACTCCTGAAGAAGATGAAGCCTTAGTTGAGTACATCAAGAAACATGGCCATGGAAGCTGGCGTTCACTCCCCAAACATGCAGGTCTCCTACGATGTGGGAAAAGTTGTCGGCTTCGGTGGATAAACTATCTTCGCCCTGGCATCAAGCGTGGCCCATTTACTAATGAAGAAGAAAGTACTATTATGCAACTTCATGGCATGCTTGGCAACAGGTGGGCTGCTATAGCATCCCAACTACCAGGAAGAACAGACAATGAGATTAAGAACTATTGGAACACCCATCTAAAGAAGCGCCTCCTTCGGTCTGGTCATTCCCTAGGGACAAAACAACCATGTGTCATTCCTGATAAAAGGATTGTCCAATCTGAATCTCCTTCTACACGCCACATGATACAATGGGAAAGTGCCAGAGTTGAGGCAGAGGCAAGGTTGTCAATGGAATCCTCATTGCATAATTCATCCTCATTGCATAATCCACATGATTACTTTCTTCAACTTTGGCATTCTGAGGTTGGACAGTCATTTCGGATGAACAAGGGAAAGGAAGGAGTAGTGTGTCAAAGCCTTGTCTCACAAGCACCATCATCATCATCTTCAGATGTGTCATTGCAAGTGAAAAACACTGGAACTAGTAACCATAAGCCAAAGCTTGAAGATGTCAACAAAATTCAAGAACAAGCAAGTAGCTACAAACCAAAGCTTGAAGATGAGTCAGGCAATTATGAATTTCTTGATACTTCTGATTCTGCACTAAAGCACCTACTAGATAGTGATATAGGATTCATGGGACAGACTGACAATTTCCTGAATCTCCTTGATGGTAGATGTGACTAA 885 0.4328 MGKAPCCDKHGVRRGAWTPEEDEALVEYIKKHGHGSWRSLPKHAGLLRCGKSCRLRWINYLRPGIKRGPFTNEEESTIMQLHGMLGNRWAAIASQLPGRTDNEIKNYWNTHLKKRLLRSGHSLGTKQPCVIPDKRIVQSESPSTRHMIQWESARVEAEARLSMESSLHNSSSLHNPHDYFLQLWHSEVGQSFRMNKGKEGVVCQSLVSQAPSSSSSDVSLQVKNTGTSNHKPKLEDVNKIQEQASSYKPKLEDESGNYEFLDTSDSALKHLLDSDIGFMGQTDNFLNLLDGRCD. 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07398 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca8g07398 294 CDD SANT 69 112 IPR001005 -
Seca8g07398 294 FunFam MYB transcription factor 69 116 - -
Seca8g07398 294 FunFam Myb transcription factor 11 67 - -
Seca8g07398 294 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca8g07398 294 CDD SANT 16 61 IPR001005 -
Seca8g07398 294 MobiDBLite consensus disorder prediction 211 228 - -
Seca8g07398 294 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca8g07398 294 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca8g07398 294 Gene3D - 14 66 - -
Seca8g07398 294 Gene3D - 69 116 - -
Seca8g07398 294 SMART sant 66 114 IPR001005 -
Seca8g07398 294 SMART sant 13 63 IPR001005 -
Seca8g07398 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Seca8g07398 294 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 242 - -
Seca8g07398 294 MobiDBLite consensus disorder prediction 211 232 - -
Seca8g07398 294 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca8g07398 294 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07398 Seca-Chr8 170924807 170927013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07398 1 294 MYB Transcription Factor Family AT3G61250 51.333 3.36e-95 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g07398 Myb_DNA-binding 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07398 K09422 - gmx:100782075 448.358