Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07375 ATGCCAGAATCTGAGGAAGAAAATACAGACTTTCCTCCCAGGGCAAAGCCAACAGAGGAACCTGGGTGTGCCATGGATTTTGATCTGGACCTGGAAAGTTCATGGGCTTTGGATCACATGTCCTTTGTCTCCAACCCCATGTCTCCTTTTCTGTTCTCCACCATCTCTGACCAACCTTCTTCTCCTCTATGGGTTTTTCCTGATGGAGAAGATGACAGGCAAGCCAGGCTTGCAGCTTCAGCCTTCTCTGATTGCCACAAGATCTTCTCTTGTGATTCAAATTCAATAATTGAGAAGCCAGTGGAGAATGATGAGAGCAAAAAGATTTTGCCACCCCTACAGCCACCAATAGAAAATTTGGATGGCTTTTGTGTAATCAAGGAAAGGATGACACAAGCACTTCGCTACTTCAAAGAATTGACTGAACTGAATGTTCTGGCTCAGGTTTGGGCACCAGTGAGGAATGGCAATCGGTATGTGCTTACAACTTCAGGTCAACCCTTTGTTCTTGATCCACATAGTAATGGACTCCATCAGTATAGAACTGTCTCCCTGATGTACATGTTTTCTGCGGATGGAGAGAATGATGGAACTCTGGGACTTCCTGGTCGAGTTTTTCAGCAGAAGTTACCAGAATGGACTCCCAATGTTCTGTACTATTCTAGTAAAGAGTATCCACGCCGAGATCATGCTCAACATTACAATGTTCGTGGAACCTTGGCTTTGCCTGTGTTTGAACCTTCTTTGCAGTCATGTGTTGGTGTGCTGGAGTTGATAATGACTTCACCAAAGATTAACTATGCTCCTGAGGTTGAAAAAATCTGCAAAGCCCTTGAGGTTAGGCTTCTTTCAACTTTGTTATTTATACTAAGTGTTATGATTTTCTTGTGTTTGGTGAGTACCATCTTGCAGGCAGTAAATTTGAGGAGTTCAGAAATTCTGGACCATTCATTCACTCAGATTTGCAATGAAGGACGTCAGAATGCATTATCAGAGATCTTGGAGATATTGACAGTGGTGTGTGAAACTCATAATTTACCTCTGGCTCAAACATGGGTTCCCTGTAAGCATAGGAGTGTTTTGGCCCATGGTGGTGGTCTAAAGAAAAATTGTTCTAGTTTTGATGGTAGTTGCATGGGGCAAGTTTGCATGTCTACAACTGATATAGCATCCTATATCATAGATGCTCATTTGTGGGGTTTCCGGGAGGCCTGTGTTGAGCATCACTTGCAACAAGGTCAAGGGGTTGCTGGGAGGGCTTTTTTGTCCCAAAGCATGTGCTTCTGCTCAAACATTACCCGATTCTGCAAAACTGATTACCCCTTAGTTCATTATGCCCTCATGTTTGGGTTAACAAGTTGTTTTGCAATCTGTTTACGGAGCTCTCATACAGGAAATGATGATTATGTATTAGAGTTTTTTCTGCCTCCTAAGATCATAGACTTTCATGAACAGAAGACACTGCTGGGATCTATATTGGCAACAATGAAACAACATTTCCAGAGTCTTAAGATTGCTGCTGGTGTTGAACTTGAGGAGCATGGTTCAATTGAAATTATTGAAGCAGAAAATGAAATAGTTAATCTTAGGCTTGAACCTATTACAATTGCTCAATCTATTAAATCACCGCATATACCTGATTCCTCACCAAATATTGGGGAGGAAGTGCCACAGGATCCATCAGAACAACAAATACTGTACTGTAATGACATAAATGAAGGAGGGAGTCATGGTGATAATGCAGGTGGAAGCATTAATCATATATCCTCCTTAGAGGCTAAAAACATAAAGAAACCCTTGGAAAGGAAACGTGGAAAAACTGAGAAATCAATTAGTCTTGAAGTTCTACAACGTTATTTTGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGTGTTTGTCCTACTACAATGAAGCGCATCTGTAGACAGCATGGGATATCCCGTTGGCCATCACGAAAGATCAACAAGGTTAACCGTTCCTTGACCAAGCTCAAGCGTGTTATTGAATCTGTCCAAGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTCAACACAAGTCCACTTCCAATTGTTGGTTCCTTTCCTGAGCCTACTACTCCAAATAAGTTCAGCCAGCAAGCCTCATTAAGCATTGGGCCTTCAGAGCCTCAGATGAAAGAGAATGAATTTGATGCATCTAAAGTATTTGAAGCAAACAGACAGGTTGGAATGGAAGATCAATTGCTAGGAGGAAGGATACAAAGTCTTGAGAAAGTGATTAATGATAAAGGCGGTTCTACTCGGGAGGTTGGGAAAGATCCAAAAAAGACTAGAACCAGGAGTGGCTCAAGTGAAGATAGTACAAATCCTACTTCTCATGGTTCATGCCATGGCAGTCCCCCAAATGAAAGTTCACCTGTAAAAGATATATTCATTACATCCAACAATGAGCAATGTGCTTTGCTGAGGGGATCACCAGAGTCAACAATGCAGCCAATTAATACATTGAACTCTCCAACCTCTTACCATAGGCCTGACATTGTGGCCACAGAACTTCAAGAGCCATTTGGAGGAATGCTAATAGAGGATGCTGGTAGCTCTAAAGACTTAAGAAATTTGTGTCCTTCAGTAGCAGAGGCCATTTTGGAGGATCTGGCTCCAGAAGCTTGTGGGACTAATCCTCCAGGTTCTGAATTGGCTCCTAAGCAGTGTATGGATACTCTTAATAAAACAGTGACACCTTTTGCAGCTAGGAAAGATGTGAAGAGTGTGACTATAAAGGCAACATATAGAGAAGATATCATAAGGTTCCGGGTCTCGTTGACCTGTGGCATTGTGGAATTGAAAGAAGAAGTTGCCAAAAGGTTGAAATTAGAGGTGGGTACATTTGATATCAAGTACCTGGATGATGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGATGTTTCAAGATCATCAGGAAGCAACATAATCAGGGTTTTGGTGCATGACATAACTTCCAATCTTGGAAGCTCCTGTGAGAGCTCAGGGGAGTGA 3039 0.4225 MPESEEENTDFPPRAKPTEEPGCAMDFDLDLESSWALDHMSFVSNPMSPFLFSTISDQPSSPLWVFPDGEDDRQARLAASAFSDCHKIFSCDSNSIIEKPVENDESKKILPPLQPPIENLDGFCVIKERMTQALRYFKELTELNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLHQYRTVSLMYMFSADGENDGTLGLPGRVFQQKLPEWTPNVLYYSSKEYPRRDHAQHYNVRGTLALPVFEPSLQSCVGVLELIMTSPKINYAPEVEKICKALEVRLLSTLLFILSVMIFLCLVSTILQAVNLRSSEILDHSFTQICNEGRQNALSEILEILTVVCETHNLPLAQTWVPCKHRSVLAHGGGLKKNCSSFDGSCMGQVCMSTTDIASYIIDAHLWGFREACVEHHLQQGQGVAGRAFLSQSMCFCSNITRFCKTDYPLVHYALMFGLTSCFAICLRSSHTGNDDYVLEFFLPPKIIDFHEQKTLLGSILATMKQHFQSLKIAAGVELEEHGSIEIIEAENEIVNLRLEPITIAQSIKSPHIPDSSPNIGEEVPQDPSEQQILYCNDINEGGSHGDNAGGSINHISSLEAKNIKKPLERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLTKLKRVIESVQGAEGAFGLNSLNTSPLPIVGSFPEPTTPNKFSQQASLSIGPSEPQMKENEFDASKVFEANRQVGMEDQLLGGRIQSLEKVINDKGGSTREVGKDPKKTRTRSGSSEDSTNPTSHGSCHGSPPNESSPVKDIFITSNNEQCALLRGSPESTMQPINTLNSPTSYHRPDIVATELQEPFGGMLIEDAGSSKDLRNLCPSVAEAILEDLAPEACGTNPPGSELAPKQCMDTLNKTVTPFAARKDVKSVTIKATYREDIIRFRVSLTCGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECMDVSRSSGSNIIRVLVHDITSNLGSSCESSGE. 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07375 1012 MobiDBLite consensus disorder prediction 1 22 - -
Seca8g07375 1012 Gene3D - 914 998 - -
Seca8g07375 1012 ProSiteProfiles RWP-RK domain profile. 597 678 IPR003035 -
Seca8g07375 1012 FunFam RWP-RK domain-containing protein 914 998 - -
Seca8g07375 1012 MobiDBLite consensus disorder prediction 696 716 - -
Seca8g07375 1012 ProSiteProfiles PB1 domain profile. 917 999 IPR000270 GO:0005515
Seca8g07375 1012 PANTHER PROTEIN NLP8 57 1011 IPR045012 GO:0003700
Seca8g07375 1012 MobiDBLite consensus disorder prediction 756 776 - -
Seca8g07375 1012 Pfam PB1 domain 918 998 IPR000270 GO:0005515
Seca8g07375 1012 SMART PB1_new 917 999 IPR000270 GO:0005515
Seca8g07375 1012 SUPERFAMILY CAD & PB1 domains 917 1002 - -
Seca8g07375 1012 Pfam RWP-RK domain 610 658 IPR003035 -
Seca8g07375 1012 MobiDBLite consensus disorder prediction 696 720 - -
Seca8g07375 1012 MobiDBLite consensus disorder prediction 777 802 - -
Seca8g07375 1012 MobiDBLite consensus disorder prediction 753 802 - -
Seca8g07375 1012 CDD PB1_NLP 918 998 IPR034891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07375 Seca-Chr8 170544016 170549157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07375 181 690 NLP Transcription Factor Family AT1G64530 65.058 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Seca8g07375 PB1 4.4e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07375 - - gmx:100786118 1672.14