Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07369 ATGGGTAGCATTGAAGAAGGGGTTGCGGTTGCAGAAGAGCGAGTGGAGGGTGTGGAAGACACAGTGTACGTTGCGGTGGGAAAGAACGTAGGGAAGAGCCAACAACTGTTGCATTGGGTAGCTCAGAATTTATGTGGCAAAAATATTTGTCTTCTTCATATTCACCAACTCGAGCCTGTCAATTCCTTGAAGGACAGAAATCTCTCTGTGTATGAACCAAAAGAACATGCCATCAAAGCATTCAAGGAGTGTGGTAGTCAAACAGTGCATGAACTCCTAGACCAATACATTCTCACTCTGGTCCCAGCAGGGGTACAGGCCTATAAATTGTTGATTGAGAAAGAAGATATTGAGAAGGGGATCATAGAAGCAATTTCTCAACACAGTATTAGATGGCTTGTAATGGGAGCAACAGCAGACAAATATAAGTTGGGTAAACTGGCTGAGCAAGTGTCGGAGAAATCTATTCTTGTACGTGAACAAGCATTGCTATCCTGTAACATTTTGTTCATTTCCAAGGGCAGCCTCATATGTTCTAGGGTAGATTGTACACATAAATCTGAAATAGAGACCGCGCCTGCATTGTTGGTGCTCAATTCAAATATGGAAGCCAAACAAGCAGAAAAGATTAAATCAGAATCAATTCCTGATGCATTGAAATATTTAGATTCTGATGATATGGAAGAGATTGAAAGTGTCAGTTCCCATTGTTCATTAACTGCAGAATGGTCCTTTAATAGTGTTATTGGCAGGTCAAAGTTGACAAATTTTCTGTTTCATGAGCAGGAAGAAGAAAATGAAAGGGAGCAAGCAAGTAAAATAAATGGTAGAATGGATAAAACCATCATGGATGCTAAGAGCATGAAATGGATAGGAATTGGAGAGGCATTAAAGAGATGGAAAGTAGAAAATAGTAATATGGAGGATGAAGCATTAGAAAGCCGTTGTGTTAAAGAGATGAGTAGAAGAAAAGAAGTTGAAGAACAATTGGTAAGGGAAAAGCAAGAAGCACAGAAAATGAAGAATCAACGAGATGAAATAATGTCTGAATTGCAATTGGTCCAAAACCAAGTTTCTGCACTTAAGAACCAGTTTTTAGAGTCCCAAAGTACGGTGACAGAGTTGGAGGAAAAGATCATATCAGCTGTGAACCTGTTGATAAGTTTCAGGGAAAAACGAGATAAACTAAGGATAGAACATGCAGATGCAGTTAGGAAAGTCAAAGCGCTGAGAAAATTTAGAGAAGCAGATACTAGTATGTTATCTTATGTGGTAGAATTCCCTTCATTCTCTTTCATGGAGATCAATGAAGCAACTCACGATTTTGACCCATCTTGGAAGATTGGAGAGGGAAGGTATGGAAGTGTTTACAAGGGACTGCTTCGGAACATGCATGTTGCCATAAAAATGTTACCCTCTTATGGTTGTCAGAGCCAATTGGAGTTTCAACATCAGGTAGAGGTTTTGAGTAGGGTAAGACATCCAAACCTGTTAACACTAATTGGAATCTGTGCGGAGTCAAGGTCACTTGTGTATGAGTACCTAAACAATGGCAGCCTTGAAAGCCACCTTGCCCAGAAAGACAAGACTCCACTTCCATGGCAAATTCGAATATCCATTGCTACTGACATATGCTCTGCTCTAATCTTCCTTCACTCCAGTGAGCCTTGTATTATCCATGGAAATTTGAAACCTAGTAAGGTCCTCCTTGATGCTAACTTTGTTGCCAAACTTGGTGACTTGGGCATTCCTTGTTTAGTCCATCAAAGTGTGGATTCAGCTGACACAAGCATAATACGTAATGATCCAAATAGAAGTTTAGCGTATATGGATCCAGAGTATCTTGTCACTGGCAAGTTTACACCAGAATCAGATATATATTCATTTGGAATCATATTGTTACAACTTCTTACTGGAAGACCACTTTCGGGTCTAGTTAGAGATATGAAATGTGCATTGGAAAAGGAAAACCTTAAAGCAGTGTTGGACTTTTCAGCTGGTGAATGGCCACTTTATCAAACCAAACAGCTGGCACATTTAGCCTTTAGGTGTTGTGAAAAGACTTGGTTGAATCGGCCAGACCTTGTGTCAGAAATCTGGAGTGTTCTTGAACCATTCAGAACTACTTGCATCAACATGGCACCGAATTTGACTTCTAAGAAGCTTCAACGTGCTCCTTCCCATTTTGTCTGCCCCATTGTCCAGGAAGTTATGGAAGATCCATACATAGCTGCCGATGGTTTTACATATGAAGAAGAGGCAATAAGAGAATGGTTGAAAAGTGGTCACGACACTTCCCCCATGACAAACCTCAAGCTTGAACACACAAATTTGGTACCTAACTATGCGCTACATAATGCCATTCAGGAGTGGCAGCAACAGTGA 2385 0.4046 MGSIEEGVAVAEERVEGVEDTVYVAVGKNVGKSQQLLHWVAQNLCGKNICLLHIHQLEPVNSLKDRNLSVYEPKEHAIKAFKECGSQTVHELLDQYILTLVPAGVQAYKLLIEKEDIEKGIIEAISQHSIRWLVMGATADKYKLGKLAEQVSEKSILVREQALLSCNILFISKGSLICSRVDCTHKSEIETAPALLVLNSNMEAKQAEKIKSESIPDALKYLDSDDMEEIESVSSHCSLTAEWSFNSVIGRSKLTNFLFHEQEEENEREQASKINGRMDKTIMDAKSMKWIGIGEALKRWKVENSNMEDEALESRCVKEMSRRKEVEEQLVREKQEAQKMKNQRDEIMSELQLVQNQVSALKNQFLESQSTVTELEEKIISAVNLLISFREKRDKLRIEHADAVRKVKALRKFREADTSMLSYVVEFPSFSFMEINEATHDFDPSWKIGEGRYGSVYKGLLRNMHVAIKMLPSYGCQSQLEFQHQVEVLSRVRHPNLLTLIGICAESRSLVYEYLNNGSLESHLAQKDKTPLPWQIRISIATDICSALIFLHSSEPCIIHGNLKPSKVLLDANFVAKLGDLGIPCLVHQSVDSADTSIIRNDPNRSLAYMDPEYLVTGKFTPESDIYSFGIILLQLLTGRPLSGLVRDMKCALEKENLKAVLDFSAGEWPLYQTKQLAHLAFRCCEKTWLNRPDLVSEIWSVLEPFRTTCINMAPNLTSKKLQRAPSHFVCPIVQEVMEDPYIAADGFTYEEEAIREWLKSGHDTSPMTNLKLEHTNLVPNYALHNAIQEWQQQ. 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07369 794 ProSiteProfiles Protein kinase domain profile. 442 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07369 794 SUPERFAMILY Protein kinase-like (PK-like) 419 703 IPR011009 -
Seca8g07369 794 Coils Coil 316 378 - -
Seca8g07369 794 Gene3D HUPs 14 146 IPR014729 -
Seca8g07369 794 CDD RING-Ubox_WDSUB1-like 726 781 - -
Seca8g07369 794 CDD STK_N 21 174 - -
Seca8g07369 794 Gene3D Phosphorylase Kinase; domain 1 413 514 - -
Seca8g07369 794 ProSitePatterns Protein kinases ATP-binding region signature. 448 469 IPR017441 GO:0005524
Seca8g07369 794 Gene3D Transferase(Phosphotransferase) domain 1 515 710 - -
Seca8g07369 794 Pfam Protein tyrosine and serine/threonine kinase 447 695 IPR001245 GO:0004672|GO:0006468
Seca8g07369 794 SUPERFAMILY RING/U-box 722 794 - -
Seca8g07369 794 SMART Ubox_2 728 791 IPR003613 GO:0004842|GO:0016567
Seca8g07369 794 PANTHER OS02G0152300 PROTEIN 22 790 - -
Seca8g07369 794 ProSiteProfiles U-box domain profile. 724 794 IPR003613 GO:0004842|GO:0016567
Seca8g07369 794 Pfam U-box domain 725 793 IPR003613 GO:0004842|GO:0016567
Seca8g07369 794 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 724 794 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07369 Seca-Chr8 170468135 170477134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07369 74 794 U-box Gene Family AT3G49060 45.551 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Seca8g07369 PK_Tyr_Ser-Thr 5.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07369 - - aprc:113871315 1134.01