Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07368 ATGGGAGCTCCTTGTTACTTTCTTGTTGGAAACGATTTTCACCCTACTACAGCTGCAGCCTGCAGGAACGTAAGGAGGTTTAGGTTCTCTCCTCTACGCCATTTTCTCGCGTTTTCTCGACAATTTTCCTTCCTGCCAAACATTTCCAATCTCTTCGCAGCTGGTTGCAATTCCTCATCGGATCGTCAGATAATCTCGCCGGCCTCCAAGCGATCTCTTCTTCGTTCTTCCTCTCTCATGCCAGTTGCAAAACTTACAGCCTCTGGCACTCCCAATTTCATGAAAACAGAAGATGGAAATGATTCTTTAGATACCATAATCAAACAAGCAATTGGAAAAGAACCTTTCCTTTCCTTTCCTAGGGCCGGTGACAGCCCAGTACAGTGGATTCAATTACTTCATGCTTTGGATCAGCAAGAACTTCCAGGGTGGCCTTTGCTCTCTCCTGTGAAGGTTCAGTTACAGAAGTGCGACAAGTGTTCTCGAGAGTTTTGCTCTCCCATTAACTATAGAAGACATATACGTGTACACCATCGGTTGAAAAAGCTTGATAAGGACTCTAAAAAAAATAGGGATCTTTTAGGGGCATATTGGGATAAGCTCTCTGTAGAAGAGGCAAAGGAAATTGTGTCGTTCAAGGATGTGATGCTGGAGGAAGTTCCAGGGTCTTCAATTTTAAAAGCTCTGACAAATCTTAGAAAACAAGGATTTTCTCCTCTACCACAGTATTATCTGAGGGCTGGTTCTGCACTTTTGGATATTGTTCAATCTAGGCCTTCTAGTTTTCCTATATCTTCCCAAGAGTTGTTCAGTATCCTTGATGATTCCAGTGAGAAAACCTTTTTATGTGGAACAGCGGTGTCAATGCAAAGATATATTTTTGATGGAGAGGCTGGAAAGATTGGTCTTGAACCAAAAAACCTAGTTGCTTGCACAAGTTTCTTGCTAGAGCAGAAATTGCTTGCTGACAAGGATGCTGAAGCATTGAGATGCCAGAAGCTTTTGGTGGAGGAGGAGGAAGCTGCTCAGAAAAGACAAGCTGAGATTTTAGAGAGGAAACGCCAGAAAAAGCTTAGACAGAAAGAACACAAGGCGAGGGAAAGACTCGTAGATGACTCAGAAATTAAAGGGAACATCAGCAGCACAGGAGAGGATGTATCAGCAGCAGAAGCATCTTTGGCTGAATGTGACTTTGAAGTTAATAATAATCCAGATATATTTGTAGATGATACTCCTTCACCACATGTAACTTATCATTGCCCAGACACTAATGAAGGTGTAGATGGGGACACACAGTCAGGGAATGATTGTGACACTGATCACAATATCGAGCGACAGACATCACAAGGACATAATCGCCGGCGCATGATGGCTTCCAGACGACAAGGGCTGCCAAAATCACAATGGGCTATAGCCAATGGTTTGTATGCGAGCCAGAATTCTCAAATGTCAAAGCCTGGAGTTATTCAAAAATACGGAACCAGCCGTGATCAAAGGGTCACTCCTATAGTTAACGGTAGTAAAGTTTGGAGCCGGAAGCCTAAACCAGAAACTAATGGGATGGTTTTAAAAGCCAGACAGCATAAGGAACCAGATGAAGGTAAGAATCATGAAGTTTTGATAGGATCTGTATCTGTTACACTGGGAAATTGCAGCCAATTAGTGGGTAATCGTGTGACATCTCAAGGGGACTGCTTGGTAGAGAATCTGGCCAAACCAATCACTGCGCAGGAGAAGCCAATGAAACTTGAGTCCGTCCAGGGAGGCAACAGTAGGTTTACAGTCAAGCTTTGGAGACCTGTTAGCCAGCATGGAACGAAAGATCCGATGCCACTTCAAAGTAGTTGGACAGAAGCTGATGTAGTTCATGGAAAGGATGATCAAAATTTGTCAGGTCAAAGTAGTTTAAGGTTTTGTAATATAGATGGTAGTGATAATGGATTCGGGAACGACTCCCTTATTGGGGCTAAAGTAGATCGAGAAAGATTACAGTTATCCTGCCATGCTGCAAAAGCCTTTCTTGCGCAGAGATGGAAAGAAGCGATCTCATCAAACCATGTGAAATTGGTTGTTTCACCTGATTCTGAACCTCCTGGATCTCAGCGGGTCCAGGATTCTGAACCAGCAGCATGTCAATCTTCTAATGTGGACAGATGTAGCAATCTTGCAAATACAGAGAACCGGTTGCCTGCAACCTCTGGAGTAGCTAAATCCAAACCCAGAATGAAGCCTGAGAAGGGAATCAAGATAAAGTACATTCCCAAACAAAAAGCAGCAGCCTAG 2283 0.4345 MGAPCYFLVGNDFHPTTAAACRNVRRFRFSPLRHFLAFSRQFSFLPNISNLFAAGCNSSSDRQIISPASKRSLLRSSSLMPVAKLTASGTPNFMKTEDGNDSLDTIIKQAIGKEPFLSFPRAGDSPVQWIQLLHALDQQELPGWPLLSPVKVQLQKCDKCSREFCSPINYRRHIRVHHRLKKLDKDSKKNRDLLGAYWDKLSVEEAKEIVSFKDVMLEEVPGSSILKALTNLRKQGFSPLPQYYLRAGSALLDIVQSRPSSFPISSQELFSILDDSSEKTFLCGTAVSMQRYIFDGEAGKIGLEPKNLVACTSFLLEQKLLADKDAEALRCQKLLVEEEEAAQKRQAEILERKRQKKLRQKEHKARERLVDDSEIKGNISSTGEDVSAAEASLAECDFEVNNNPDIFVDDTPSPHVTYHCPDTNEGVDGDTQSGNDCDTDHNIERQTSQGHNRRRMMASRRQGLPKSQWAIANGLYASQNSQMSKPGVIQKYGTSRDQRVTPIVNGSKVWSRKPKPETNGMVLKARQHKEPDEGKNHEVLIGSVSVTLGNCSQLVGNRVTSQGDCLVENLAKPITAQEKPMKLESVQGGNSRFTVKLWRPVSQHGTKDPMPLQSSWTEADVVHGKDDQNLSGQSSLRFCNIDGSDNGFGNDSLIGAKVDRERLQLSCHAAKAFLAQRWKEAISSNHVKLVVSPDSEPPGSQRVQDSEPAACQSSNVDRCSNLANTENRLPATSGVAKSKPRMKPEKGIKIKYIPKQKAAA. 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07368 760 Coils Coil 340 367 - -
Seca8g07368 760 ProSitePatterns Zinc finger C2H2 type domain signature. 157 178 IPR013087 -
Seca8g07368 760 MobiDBLite consensus disorder prediction 693 760 - -
Seca8g07368 760 MobiDBLite consensus disorder prediction 697 732 - -
Seca8g07368 760 Coils Coil 758 760 - -
Seca8g07368 760 MobiDBLite consensus disorder prediction 434 451 - -
Seca8g07368 760 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 80 758 - -
Seca8g07368 760 SMART c2h2final6 155 177 IPR013087 -
Seca8g07368 760 MobiDBLite consensus disorder prediction 424 455 - -
Seca8g07368 760 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 182 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07368 Seca-Chr8 170453865 170463451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07368 97 757 C2H2 Transcription Factor Family AT4G25610 43.006 9.33e-149 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g07368 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07368 - - gmx:100799153 1033.09