LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g07365	ATGCCTTCATGGTGGGGAAAATCATCATCAAAAGAAACCAAGAAGAAAGCTGGTAAGGAAAGTTTTATATACACATTGCACCGAAAACTTAAAATTCCATCTGAAGGTAGACTAAGCATTATATCTGGAGGATCTCGTAGACATTGCAATGACACAATTTCAGAGAAGGGGGATCGTTCTCCAGCTGAATCAAGATCTCCTTCACCTTCTAAAGTGGCTAGGTGTCAAAGTTTTGCTGAAAGGCCTCATGCTCAGCCACTACCACTTCCTGGTCTGCACCCTGCAAGTGTAGGCCGAGTAGATTCTGAAATTAGCATATCATCAAAATCAAGACTGGAAAAGGGCTCCAAGCCATCATTGTTTCTTCCACTTCCAACACCTGGATGCATACGTTGTAGGCCAAACCCTGCAGATTTGGATGGAGATATTGTCACTGCTTCAGTCTTTAGTGATTGCTCTGCTGATAGTGATGAGCCAGCAGACTCACGCAATCGCAGTCCTCTGGCAACTGACTCTGAGACTGGGACTAGAACTGCTGCTGGCAGTCCTTCCAGCTTGATGCTCAAGGATCAATCATCTGCTGCTTCCCAATTGAATTCAAGAGAAGTAAAAAAACCGGCAAACATTCTAAGTAATCATGTGTCTTCTACTTCACCCAAACGGAGACCTTTACGAAACCATGTTCCAAACCTTCAGGTTCCTCCTCATGGTGCCTTCTATAGTGCTCCTGACAGTTCCTTGTCAAGTCCATCAAGAAGTCCATTGAGGGCATTTGGCACAGATCAGGTGTTGAACTCTACTTTTTGGGCTGGAAAGCCATATCCCGAGGTCAATTTAGTTGGATCTGGGCACTGCTCTAGTCCGGGTTCTGGTCATAATTCTGGGCACAATTCAATGGGAGGGGACATGTCAGGACCATTATTTTGGCAACCAAGCAGGGGTAGCCCTGAGTATTCTCCGGTACCTAGTCCCAGAATGACTAGCCCTGGTCCAAGCTCTAGAATTCAGAGTGGAGCAGTCACACCTATTCATCCTAGAGCTGGGGGAACGCCCACTGAATCGCAGACAGGATGGATTGATGATGGAAAACAACAGAGTCACCGTTTGCCCCTTCCTCCTTTATCAATTACCAATTCCTCGCCATTCTCTCATTCTAATTCTGCAGCAACATCTCCATCTATGCCAAGAAGTCCAGCTAGAGCGGATAACCCAATGAGCTCTGGGTCACGTTGGAAAAAAGGAAAGCTGCTTGGCAGAGGCACATTTGGACACGTCTATCTTGGCTTCAATAGTGAAAGTGGTGAAATGTGTGCAATGAAGGAGGTTACTCTGTTTTCAGATGATGCCAAGTCTATGGAAAGTGCTAAGCAATTAATGCAGGAAGTTCATTTATTAAGCCGTTTACGGCATCCGAATATTGTGCAGTATTATGGTTCCGAAACAGTAGATGACAAGCTTTACATATACCTTGAGTATGTATCTGGAGGCTCCATACATAAACTTCTTCAAGAGTATGGACAATTTGGTGAACTAGCTATTCGTAGTTATACTCAACAAATTTTGTCAGGGCTTGCTTATTTACATGCTAAACATACTCTCCACAGAGACATCAAAGGAGCAAATATACTGGTAGATCCAAATGGTCGGGTCAAGTTGGCAGACTTTGGCATGGCGAAACATATAACAGGGCAGTCATGTCCATTGTCATTCAAAGGAAGCCCTTATTGGATGGCTCCCGAGGTTATAAAGAACTCTAACGGATGCAGCCTTGCTGTGGATATATGGAGTCTTGGATGCACAGTTTTGGAAATGGCTACAACCAAGCCTCCTTGGCATCAGTATGAAGGGGTTGCTGCGATGTTCAAGATTGGTAATAGTAAGGAACTCCCAGCAATCCCAGATCATCTCTCAAATGAAGGAAAAGATTTTGTTAGAAAATGTCTACAACGTAATCCACGTGATCGCCCTTCAGCAAGTGAATTATTGGACCACCCTTTTGTAAAATGTGCTGCACCTTTGGAAAGACCAATTCTTGTTCCTGAAGCTTCAGACCCTGTTTCTGGGATCACACAAGGAACAAAAGCTCTGGGCATTGGTCAAGGAAGAAATCCGTCTGCCTTGGATTCAGATAAACTCTCTGTTCATTCTTCTAGGGTTTTGAAAAGTAATCCTCATGAAAGTGAAATCCACATTCCAAGGAATATATCTTGCCCTGTCTCTCCCATTGGAAGCCCACTATTGAGGTCAAGATCACCTCAGCACAGGAATGGGAGAATGTCTCCTTCTCCTATATCTAGCCCTCGGACTGCTTCTGGTGCATCCACGCCTCTCACTGGTGGCAGTGGTGCCATTCCATTTAGCAATCACTTAAAACAGTCAGTTTACTTTCAAGAGGGTCTTGGAAGCATGCCAAAGTCCTCAAATGGTGTCTACATTAATGGCTCTGCTCATCACGACTCAAATGTTGACATTTTTCGAGGAATGCAAATGGGGTCTCACATGACATCAGAACTTCTTTCCAGTGAAAATGATGTTCTGGGTAAGCAGTTTGCAAGGTCTCCACATTCAGAGCCATATGATTTTCAGTCAGTCTTAGCTGATCGTGTTGGCCGGCAGCTTTTGGGCGACCCTGTTAAGATTAACCCTTCCCTTGATCTAAGTCCCAACTCATCTTTGCTCAACCGAGCAAATGGTTTATGA	2700	0.4452	MPSWWGKSSSKETKKKAGKESFIYTLHRKLKIPSEGRLSIISGGSRRHCNDTISEKGDRSPAESRSPSPSKVARCQSFAERPHAQPLPLPGLHPASVGRVDSEISISSKSRLEKGSKPSLFLPLPTPGCIRCRPNPADLDGDIVTASVFSDCSADSDEPADSRNRSPLATDSETGTRTAAGSPSSLMLKDQSSAASQLNSREVKKPANILSNHVSSTSPKRRPLRNHVPNLQVPPHGAFYSAPDSSLSSPSRSPLRAFGTDQVLNSTFWAGKPYPEVNLVGSGHCSSPGSGHNSGHNSMGGDMSGPLFWQPSRGSPEYSPVPSPRMTSPGPSSRIQSGAVTPIHPRAGGTPTESQTGWIDDGKQQSHRLPLPPLSITNSSPFSHSNSAATSPSMPRSPARADNPMSSGSRWKKGKLLGRGTFGHVYLGFNSESGEMCAMKEVTLFSDDAKSMESAKQLMQEVHLLSRLRHPNIVQYYGSETVDDKLYIYLEYVSGGSIHKLLQEYGQFGELAIRSYTQQILSGLAYLHAKHTLHRDIKGANILVDPNGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCSLAVDIWSLGCTVLEMATTKPPWHQYEGVAAMFKIGNSKELPAIPDHLSNEGKDFVRKCLQRNPRDRPSASELLDHPFVKCAAPLERPILVPEASDPVSGITQGTKALGIGQGRNPSALDSDKLSVHSSRVLKSNPHESEIHIPRNISCPVSPIGSPLLRSRSPQHRNGRMSPSPISSPRTASGASTPLTGGSGAIPFSNHLKQSVYFQEGLGSMPKSSNGVYINGSAHHDSNVDIFRGMQMGSHMTSELLSSENDVLGKQFARSPHSEPYDFQSVLADRVGRQLLGDPVKINPSLDLSPNSSLLNRANGL.	900

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g07365	899	MobiDBLite	consensus disorder prediction	706	720	-	-
	Seca8g07365	899	CDD	STKc_MEKK1_plant	410	667	-	-
	Seca8g07365	899	Pfam	Protein kinase domain	412	667	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca8g07365	899	MobiDBLite	consensus disorder prediction	746	784	-	-
	Seca8g07365	899	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	60	677	-	-
	Seca8g07365	899	MobiDBLite	consensus disorder prediction	285	300	-	-
	Seca8g07365	899	ProSiteProfiles	Protein kinase domain profile.	411	667	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca8g07365	899	MobiDBLite	consensus disorder prediction	348	362	-	-
	Seca8g07365	899	MobiDBLite	consensus disorder prediction	40	97	-	-
	Seca8g07365	899	FunFam	Mitogen-activated protein kinase kinase kinase	409	691	-	-
	Seca8g07365	899	SUPERFAMILY	Protein kinase-like (PK-like)	409	736	IPR011009	-
	Seca8g07365	899	MobiDBLite	consensus disorder prediction	370	404	-	-
	Seca8g07365	899	Gene3D	Transferase(Phosphotransferase) domain 1	408	683	-	-
	Seca8g07365	899	SMART	serkin_6	411	667	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca8g07365	899	MobiDBLite	consensus disorder prediction	682	784	-	-
	Seca8g07365	899	ProSitePatterns	Protein kinases ATP-binding region signature.	417	440	IPR017441	GO:0005524
	Seca8g07365	899	MobiDBLite	consensus disorder prediction	285	412	-	-
	Seca8g07365	899	MobiDBLite	consensus disorder prediction	165	223	-	-
	Seca8g07365	899	MobiDBLite	consensus disorder prediction	152	228	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g07365	Seca-Chr8	170418103	170426213	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g07365	4	796	MAP Kinase Kinase Kinase	AT1G63700	63.648	0.0	884

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Seca8g07365		Pkinase	3.5e-73	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g07365	K20717		-	gmx:100797994	1556.19