Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07337 ATGATGGCTGAGGACTGGGATCTCTTTGCCATCGTGAGAAGCTGTCAATCAGCCACCAATACTGCCACAACAAAAAACCCACCAAACACCACCAATACTACACATCCTTCCTTGGCCAATTCTACTGTTAAGGAAGAAGAAGAAGAATATGAGGCATTTTCTTTTCCCAATATAGTGCAACCCATGACCAATGAGTTTCAAGAGCTAAACCAATTGTTCACATCCTTTAACCCCACCACCAACACCACTACCCCTAGTGGCTGTGGTATCAATCCCAATTCCCCTGATTTTGCAGGACAACAGCAAAGCCACCATCTTCCTGTGCTTGCCCCCCTTACTACTCACACCTCCATTTGGCCCCATTTTGTGCCAGAAGCATCCACTTCTTCTAGTTTCAATAGATTCCATGACCAACAACAACAACAACAGCAACAGCAACAGCAATCACAACATGTACAGAAACAACACAGTCAACTACAACCAATTCAGAAACAGGAGTTTCAAGCAACCCAGAGCAATTCTGCTTTAGTTTTACCAAACGCACAACCCCAAACACCCAGATCAAGAAAAAGAAAAAGCCAACAGAAGAAAATGGTGTGCCATGTAACTGCAGATAACGTCTCAGCAGATTTATGGGCATGGCGTAAATATGGACAAAAACCCATTAAAGGTTCACCATATCCAAGGAACTACTATAGGTGTAGCAGCTCAAAAGGTTGTGCAGCACGAAAGCAAGTTGAACGGAGCAACACTGAAGCTGACATGTTCATCGTCACGTACACCGGAGACCACACCCATCCCAGACCCACCCACCGGAACTCGCTCGCCGGAAGTACGAGAACCAAGCAGCATCAACCCTCTTCACAAGTCAACACTTTACCTTCATCCTCTTCCTCTCCTGCAACACACTCTCCGGTGTCAACGTCCGCAGACCCACCGGAAAACGAGGAAGGAGATCCGGATCCAGACCCGGACCCGGAAATTGAATCCGACGATGAAGGAGAAGACGAAGCAGACATTATGTTACCCAACCCGGATGCCATGGCAACGAATGTCTTGCTGGATTTGGATCACTTTGACGGTGGTTGTTCAACCGGTGGATCCTTACCCGATACGGACCCGGTTTGA 1128 0.4725 MMAEDWDLFAIVRSCQSATNTATTKNPPNTTNTTHPSLANSTVKEEEEEYEAFSFPNIVQPMTNEFQELNQLFTSFNPTTNTTTPSGCGINPNSPDFAGQQQSHHLPVLAPLTTHTSIWPHFVPEASTSSSFNRFHDQQQQQQQQQQQSQHVQKQHSQLQPIQKQEFQATQSNSALVLPNAQPQTPRSRKRKSQQKKMVCHVTADNVSADLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCAARKQVERSNTEADMFIVTYTGDHTHPRPTHRNSLAGSTRTKQHQPSSQVNTLPSSSSSPATHSPVSTSADPPENEEGDPDPDPDPEIESDDEGEDEADIMLPNPDAMATNVLLDLDHFDGGCSTGGSLPDTDPV. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07337 375 Gene3D WRKY domain 191 262 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g07337 375 MobiDBLite consensus disorder prediction 271 311 - -
Seca8g07337 375 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 332 IPR044810 GO:0003700
Seca8g07337 375 SMART WRKY_cls 208 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g07337 375 ProSiteProfiles WRKY domain profile. 203 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g07337 375 Pfam WRKY DNA -binding domain 210 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g07337 375 FunFam WRKY transcription factor 22 191 262 - -
Seca8g07337 375 MobiDBLite consensus disorder prediction 127 162 - -
Seca8g07337 375 SUPERFAMILY WRKY DNA-binding domain 203 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g07337 375 MobiDBLite consensus disorder prediction 260 347 - -
Seca8g07337 375 MobiDBLite consensus disorder prediction 314 340 - -
Seca8g07337 375 MobiDBLite consensus disorder prediction 176 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07337 Seca-Chr8 170083964 170085801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07337 147 302 WRKY Transcription Factor Family AT5G52830 57.317 1.39e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca8g07337 WRKY 1.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07337 - - aprc:113871802 369.777