Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07328 ATGGAACAGAAGCACGTTCTGTTGTCAGCATTGAGTGTTGGGGTTGGGTTAGGTGTGGGACTGGGGTTAAGCACAGGACAGGTTGTGCAAAAATGGGTTGGAGGAGATACTAAGTCTAATGAGATTTCTGGGGAGCAGATTGTGCTGGAGCTCAAGAACCTAGTGGTTGATGGGAAGAACAGCACAGTCACATTTGATGACTTTCCTTATTACTTAAGTGAAAGAGTCCGGGTTTTGTTAACAAGTGCTGGATATGTTCATTTAAAACAACAACACTTTTCCAAGCACATGAAGAACCTTTTACCAGCAAGCAGAGCTATTTTGCTTTATGGACCTGCAGAACCTTATCACCAAAAGCTTGCCCAAGCTTTAGCACATTGCTTTGAATCGAAGTTACTGTTGCTAGATGTTACTGACTTCTCTTTGAAGATGCAGAGGAAATACGGATGTTCTAAAAAAGAACCATATTTTAAAAGGTCCATATCTGAGGTGACTTTGGAGCGCATATCTGATTTGTTTGGTTCCTTGTCGATCCTCCCTTCAACAGGTGAAACAAGAGGTACACTAAGTCGACAAAATAGTGGAATTGAAAATTCCAGTAATTCTCCAAAGCTTCGTAGGAACGCCTCTAATGCATCTGAATCGAATTGCAGTTCTGAAAATGGTCCATTGGATTCAGCTTCTTTTAAGTGTGCAAGCCGCTTCTGTTTTGATGAAAAGCTCTTCGTGCAGTCACTATATGAGGTCTTGGTATCTATGTCAGAAACTGGATCCATTATTTTATACATCAAGGATATTGAGAAGCTCTTTTTTCGATCACCAAGGATATTCATTTTGTTCCAAAAGCTGATAAAGAAACTTTCAGGGTCAGTGTTAATACTCGGTTCCCGGATTTACAGTTCAGAAGATGATTGTACAGAAGTTGGTGAAAAGCTCACTGTGTTATTCCCTTACAACATTGAGATCGAACCACCTCAAGATGAGACTCGTCTTGGGAAGTGGAAAACCCAGCTAGCAGTGGCCATGAAATTAATTCAGTTTGAAGATAACAGAAACCACATTGCTGAAGTACTTGCAGAAAATGACATTGATTGTAATGACTTGGATTCAATCTGCCACGATGACACTAACCTACTCAGTGATTATATTGAAGAGATTGTGGTATCTGCAATTTCTCACCACATGATGGATACCAAACATCCAGAATACCGAAATGGAAAGCTAATTATATCAGCCAAGAGTTTGTCCCATGTATTGAAGCTGTTCCGGGAAGGTGGAAGTTGTGGGAAAGATAATACCAAGACTAAAGAATCAAGCAAGGAAGTTCCTCCTGACAATGAGTATGAGAAGCGCATAAGAGCAGAGGTTATTCCAGCAAATGAGTTAGGGGTTACATTTGCAGATATTGGTGCATTGGATGATATTAAGGAATCACTTCAGGAATTGGTCATACTTCCCCTTAGAAGACCAGACCTATTCAAAGGAGATGGACTTCTGAAACCTTGTAGAGGTATATTGCTTTTTGGGCCTCCTGGTACAGGAAAAACAATGCTTGCAAAAGCAATTGCAAATGAAGCTGGAGCAAGTTTCATTAATGTCTCAATATCCACCATCACTTCAAAATGGTATGGAGAAGATGAGAAGAATGTCCGAGCTCTGTTTTCACTAGCAGCAAAGGTTGCCCCAACTATTATTTTTATTGATGAGGTTGATAGCATGCTTGGACAGCGGTCCAGATATTGTGAGCACGAGGCAATGAGAAAGATTAAAAATGAATTCATGACCCACTGGGATGGGCTATTATCAAAAGCTGATGAGCAAATTCTGGTTCTTGCTGCCACTAACAGGCCATTTGACCTTGATGAAGCAATCATAAGACGGTTTCAGCGCAGGATCATGGTTGGTCTTCCATCTGCTGAGACAAGGGAAGTGATCTTGAAAACTCTACTAGCTAAGGAAAAATATGAAAATATAGACTTCAAAGAGCTGTCAACTATGACAGAAGGATATACTGCAAGCGATCTTAAGAATTTGTGCATGACGGCGGCTTATCAACCTCTTAGGGAGCTAATGCGGCAGGAAAGGGCAAAAGAAATGAAAAAGAAGAAAAAGGAGGCAGAAGTTCAAAGCTCAAAAGATGCTTCCAATGCCACAAAAGATAAAGAAGACCAAGTTCAAAGCTCAGGAGATGCTTCCAATGCTACTAAAGATAAAGAAGACCAAGTTCAAAGCTCACAAGATGCTTCCAATGCTACAGAAGATAAAGAAGACCAAGTTCAAACCTCACAAGATACTCCCAGTGCTACAGAAGATAAAGAAGACCAAGTGATTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAAGCAAAGAATAAGGTGGCTGCGAGTTTTGCTGCAGAAGGATCAATAATGGAAGAGCTGAAGCAGTGGAATGATTTGTATGGAGAAGGAGGTTCTTCAACGAAGAAAAAGCAGCTCACTTATTTCCTTTAG 2496 0.4067 MEQKHVLLSALSVGVGLGVGLGLSTGQVVQKWVGGDTKSNEISGEQIVLELKNLVVDGKNSTVTFDDFPYYLSERVRVLLTSAGYVHLKQQHFSKHMKNLLPASRAILLYGPAEPYHQKLAQALAHCFESKLLLLDVTDFSLKMQRKYGCSKKEPYFKRSISEVTLERISDLFGSLSILPSTGETRGTLSRQNSGIENSSNSPKLRRNASNASESNCSSENGPLDSASFKCASRFCFDEKLFVQSLYEVLVSMSETGSIILYIKDIEKLFFRSPRIFILFQKLIKKLSGSVLILGSRIYSSEDDCTEVGEKLTVLFPYNIEIEPPQDETRLGKWKTQLAVAMKLIQFEDNRNHIAEVLAENDIDCNDLDSICHDDTNLLSDYIEEIVVSAISHHMMDTKHPEYRNGKLIISAKSLSHVLKLFREGGSCGKDNTKTKESSKEVPPDNEYEKRIRAEVIPANELGVTFADIGALDDIKESLQELVILPLRRPDLFKGDGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSISTITSKWYGEDEKNVRALFSLAAKVAPTIIFIDEVDSMLGQRSRYCEHEAMRKIKNEFMTHWDGLLSKADEQILVLAATNRPFDLDEAIIRRFQRRIMVGLPSAETREVILKTLLAKEKYENIDFKELSTMTEGYTASDLKNLCMTAAYQPLRELMRQERAKEMKKKKKEAEVQSSKDASNATKDKEDQVQSSGDASNATKDKEDQVQSSQDASNATEDKEDQVQTSQDTPSATEDKEDQVITLRPLNMEDMRQAKNKVAASFAAEGSIMEELKQWNDLYGEGGSSTKKKQLTYFL. 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07328 831 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 463 683 IPR027417 -
Seca8g07328 831 Gene3D - 637 719 - -
Seca8g07328 831 MobiDBLite consensus disorder prediction 695 784 - -
Seca8g07328 831 ProSitePatterns AAA-protein family signature. 608 627 IPR003960 GO:0005524|GO:0016887
Seca8g07328 831 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 463 639 - -
Seca8g07328 831 Gene3D - 463 727 IPR027417 -
Seca8g07328 831 MobiDBLite consensus disorder prediction 695 726 - -
Seca8g07328 831 Pfam AAA+ lid domain 657 700 IPR041569 -
Seca8g07328 831 Pfam ATPase family associated with various cellular activities (AAA) 505 635 IPR003959 GO:0005524|GO:0016887
Seca8g07328 831 Coils Coil 687 707 - -
Seca8g07328 831 SMART AAA_5 501 638 IPR003593 GO:0016887
Seca8g07328 831 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 50 830 - -
Seca8g07328 831 MobiDBLite consensus disorder prediction 184 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07328 Seca-Chr8 170002568 170009875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07328 464 694 Calmodulin-binding Proteins AT3G56690 39.574 2.27e-41 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07328 - - gmx:100793760 1118.22