LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g07325	ATGGATAGAGACATCACCACATGGGCCTCAAACACCTCAGGTGTTGGTGTAGTAGCTGCAGTCATGGCTGAATCTGGCAACTTCATCCTTCATAACACCAACAACCACCCTGTGTGGCAGAGTTTTTCTCAACCTTCTGATACACTCCTCCCTAACCAGCCTCTAACAGTTTCTTCAGAATTAACATCATCAAAGTCTTCCTCCCATGGTGGCTACTATGCTCTCAAAATGCTTCAACAACCCACTTCCTTAAGCCTTGCACTGACTTACAACCTGCAAGAAACTTACCAGGATTTGGATGAATCATACACCAACTATTCCTATTGGAAAGGCCCTGATATCTCCAATGTTACAGGGGAAGTTATAGCAGTTTTAGATCAAGCTGGGAGCTTTGGAATTGTATATGGAGAATCATCTGATGGGGCTGTTTATGTGTACAAGAATGATGATGATGATGCAGGCTTGTCTTCTGCAATTCATCAATCTACACCATTAACTGTTCTTAGGAGGTTGACACTGGAAAAGAATGGAAATTTGCGTTTGTACCGTTGGGGTGATGTAAATGGATCAAAACAGTGGGTGCCACAGTGGGCTGCAGTTTCAAATCCATGTGATATTGCTGGAATTTGTGGCAATGGGGTTTGTAACTTGGATAGAAGTAAGACAAATGCCTCTTGCACTTGCTTACCAGGAACTTCTAAAGTTGAGAGGGATGGTGTATGCTATGAGAATTCATCTCTTGTTGGAAAATGCAATGGTCAAACTCGGAATGAAAACCAGACATCCCAGTTTAGGATGTCAATGGTGCAGCAAACTAACTATTATTTTTCTGAATCTTCAGTGATAGCTAACTATAGTGATGTTGCTTCAGTATCAAAATGTGGGGATGCTTGTTTATCAGATTGTGATTGTGTTGCTTCTGTTTATGGGCTAAATGAGGAGAGACCATACTGCTGGGTGTTGAGGAGCTTAAGTTTTGGTGGTTTTGAGGATACCAGCTCAACTTTATTTGTGAAGGTTAGAGCAAATGCATCATGGACACCAGAAGGACAAGCAAGAGGGTCTAATAATAGCACTTCTGATGGAATGAGGAGTGCCAAGGAGAAGGCTGTGATTATTCCCATTGTGATGAGCATGACAGTTCTAATTGTTTTGCTATGTTTATTACTGTATTACAGTGTTCATAGAAAAAGAACTTTGAGAAGAGAGATGGAGAGTTCCTTGATCTTATCAGGTGCTCCAATGAATTTCACCTACCGTGATTTGCAAATCAGGACAAGCAACTTTTCACAGCTTCTAGGAACAGGTGGATTTGGAAGTGTGTATAAAGGAAGCCTAGGAGATGGTACCCTAGTGGCAGTGAAGAAACTTGATAGGGTTTTGCCCCATGGAGAGAAGGAATTTATCACTGAAGTAAACACCATTGGCTCAATGCATCATATGAATTTGGTTCGCCTATGCGGCTATTGCTCAGAGGGATCACACCGGCTTCTGGTTTATGAGTTCATGAAGAATGGATCTTTGGATAAATGGATCTTCCCTTCATATCAAGGGCGAGATAGATTGCTAGATTGGTCAACTCGTTTTGAAATAGCCATAGCTACTGCACAAGGGATTGCATACTTTCATGAGCAGTGCAGAGATAGGATAATACATTGTGACATCAAACCAGAAAATATATTGTTAGATGAAAACTTTTGTCCTAAAGTATCTGATTTTGGACTGGCCAAGTTGATGGGAAGGGAGCACTCTCATGTGGTAACAATGGTGAGAGGCACTAGAGGTTATTTAGCACCAGAATGGGTTAGTAATCGCCCTATAACTGTAAAAGCTGATGTTTATAGCTATGGGATGCTTCTTTTAGAAATCATTGGTGGAAGGAGAAATCTTGACATGTCCTATGATGCAGAGGATTTCTTCTATCCTGGTTGGGCTTATAAGGAGATGACAAATGGATCACCAATCAAAGTGGCAGATAGAAGATTAAATGGGGCAGTTGATGAAGAAGAGCTCATGAGAGCTCTGAAAGTTGCCTTTTGGTGCATCCAAGATGAGGTTTTCATGAGACCACCAATGGGGGAAGTGGTGAGAATGTTGGAAGGTTCAATCAACATTAATATGCCACCAATGCCACAAACAGTTGTAGAGTTAATTGAGGAAGGCTTAGACCATGTATACAAAGCTATGAAAAGAGAGTATAACCATTTCAGCTCATTCACCATTAACAGCCACCTTACATCTCATGCCACATGTAGCAATTCCACAATGTCACCAAGATAG	2280	0.4132	MDRDITTWASNTSGVGVVAAVMAESGNFILHNTNNHPVWQSFSQPSDTLLPNQPLTVSSELTSSKSSSHGGYYALKMLQQPTSLSLALTYNLQETYQDLDESYTNYSYWKGPDISNVTGEVIAVLDQAGSFGIVYGESSDGAVYVYKNDDDDAGLSSAIHQSTPLTVLRRLTLEKNGNLRLYRWGDVNGSKQWVPQWAAVSNPCDIAGICGNGVCNLDRSKTNASCTCLPGTSKVERDGVCYENSSLVGKCNGQTRNENQTSQFRMSMVQQTNYYFSESSVIANYSDVASVSKCGDACLSDCDCVASVYGLNEERPYCWVLRSLSFGGFEDTSSTLFVKVRANASWTPEGQARGSNNSTSDGMRSAKEKAVIIPIVMSMTVLIVLLCLLLYYSVHRKRTLRREMESSLILSGAPMNFTYRDLQIRTSNFSQLLGTGGFGSVYKGSLGDGTLVAVKKLDRVLPHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSHRLLVYEFMKNGSLDKWIFPSYQGRDRLLDWSTRFEIAIATAQGIAYFHEQCRDRIIHCDIKPENILLDENFCPKVSDFGLAKLMGREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIIGGRRNLDMSYDAEDFFYPGWAYKEMTNGSPIKVADRRLNGAVDEEELMRALKVAFWCIQDEVFMRPPMGEVVRMLEGSININMPPMPQTVVELIEEGLDHVYKAMKREYNHFSSFTINSHLTSHATCSNSTMSPR.	760

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g07325	759	ProSiteProfiles	Protein kinase domain profile.	427	703	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca8g07325	759	ProSitePatterns	Protein kinases ATP-binding region signature.	433	456	IPR017441	GO:0005524
	Seca8g07325	759	Gene3D	Transferase(Phosphotransferase) domain 1	503	716	-	-
	Seca8g07325	759	Gene3D	-	1	80	IPR036426	-
	Seca8g07325	759	SMART	serkin_6	427	699	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca8g07325	759	FunFam	S-receptor-like serine/threonine-protein kinase	396	502	-	-
	Seca8g07325	759	Gene3D	Phosphorylase Kinase; domain 1	391	502	-	-
	Seca8g07325	759	Pfam	Protein kinase domain	430	631	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca8g07325	759	SUPERFAMILY	alpha-D-mannose-specific plant lectins	3	57	IPR036426	-
	Seca8g07325	759	ProSiteProfiles	Bulb-type lectin domain profile.	1	43	IPR001480	-
	Seca8g07325	759	PIRSF	SRK	2	752	IPR024171	GO:0004674
	Seca8g07325	759	PANTHER	OS07G0415500 PROTEIN	5	711	-	-
	Seca8g07325	759	Pfam	S-locus glycoprotein domain	145	232	IPR000858	GO:0048544
	Seca8g07325	759	CDD	STKc_IRAK	433	701	-	-
	Seca8g07325	759	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	550	562	IPR008271	GO:0004672\|GO:0006468
	Seca8g07325	759	SUPERFAMILY	Protein kinase-like (PK-like)	405	700	IPR011009	-
	Seca8g07325	759	Pfam	D-mannose binding lectin	6	60	IPR001480	-
	Seca8g07325	759	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	503	709	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g07325	Seca-Chr8	169951399	169954263	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g07325	377	709	Receptor kinase-like Gene Family	AT5G20050	43.056	2.86e-83	270

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Seca8g07325		Pkinase	6.5e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g07325	-		-	gmx:100794281	1358.2