Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07316 ATGGAGGGTTTTTGGAGCGTGTTTTGTGGGGAATCTGGTTGTTCAGAGAGTGGAACAAAGCATTGCAGTTATGATTTTAAGTTTCTAATTGATCCTTCCGCATGTATCAACCATTTATTCATATCTTGCTTTGATGTGTTGCTGCTCATCATGCTCTTAGTTATAATGATCCACAAGTCATCATTAAAACCATTTGAAGGTCTAACACAGGTGCAAAGATATTCAAATTTGCAACTAGTTTCTGCTACAGTCAATGGCGCTCTTGGATTGTTACATTTGTTCTTAGGAATTTGGGTTTTAGAAGAGAAGTTAAGGAAAAGCCAAACTGTGTTGCCTCTTAATTTGTGGTTGCTAGAATTCTTTCAGGGATTAACATGGTTGTTAGTGGGTTTAACAATAAGTCTTAAGTTGAAGAAGCAACTTCCAAGGACATGGTTAAGGCTTTTTTCTATTCTAATCTTGTTGGTTTCTGGTGTTTTCTGTGCTTTATCCTTGTTTTATGCATTCTGCAGTAGAGAACTGTCCCTTAAGCTGGCTTTAGATGTCCTCTCTTTTCCAGGGGCATTATTAATGCTGTTATGCACATATAAGGAATATAAGTATAGGGACACTGACAAAGAAATTGATGAAAGCCTTTACACCCCTTTGAATGGTGAGTCCAATAAAAATGATTCTATTAGCTATGTAAATGTAACCTTATTTGCCAATGCTGGATTCTTCAGTAAGATGTCATTTTGGTGGCTGAATCCATTGATGAAGAGGGGAAAAGAGAAAACACTTCAGGATGAAGATGTCCCAAAGTTGCGGGAGGAAGATAGAGCAGAAAGTTGTTATTTGTTGTTTCTAGATCACTTGAACAAGCAGAAACAGAAGGATTCTTCCTCACAGCCATCAGCTTTGAGGACAATAGTTTTATGCCACTGGAGAGAAATTTTGATATCAGGATTCTTTGCATTGCTAAAGGTACTTGCTTTGTCTTCTGGACCTCTGCTTCTGAATTCCTTTATATTGGTTGCTGAGGGTAATGAAAGTTTCAAATATGAAGGTTTTGTATTGGCCATATCACTTTTCCTTATAAAAATTGTAGAATCCCTATCACAAAGGCAGTGGTATTTCCGTTCTAGACTTATTGGTGTGAAAGTTAGGTCACTGCTAACTGCAGCCATTTATAGAAAGCAACTGAGGTTATCCAATTCTGCTAGATTGATGCACTCTGGTGGTGAGATAATGAATTATGTGGCTGTGGATGCTTATAGAATTGGAGAATTTCCCTATTGGTTTCACCAGACATGGACAACTAGCTTCCAGCTATGTATCTCATTAGTACTACTTTACCATGCTGTTGGGCTAGCTACAGTTGCCACCTTGGTGGTGATTGTTATCACAGTGCTTTGCAATACCCCACTTGCAAAGTTACAACACAAGTTTCAGACCAAACTTATGGTGGCACAAGATGAGAGATTGAAGGCCAGTTCTGAGGCTCTTGTGAATATGAAGGTGTTGAAGTTGTATGCATGGGAAACCAACTTCAAAAATGTTATAGAAGGATTAAGGAATGTGGAGCTCAAATGGTTGTCTGCAGTGCAATTGATAAAGGCATACAACTCATTTCTCTTTTGGTCCTCACCTGTTTTGGTCTCTGCTGCTTCCTTTGGGGCATGTTACTTTCTTAATGTTCCTTTGCATGCAAATAATGTTTTCACTTTTGTGGCAACTTTGCGCCTTGTTCAAGAGCCAATTAGAACCATCCCTGATGTTATTGGGGTGGTCATTCAAGCAAAAGTTGCATTTACTCGGATTGTAAAATTCCTGGAGGCACCTGAACTGCAGAATGAAAATGTCAGTAAGAGGTGCTTTGATGACAATATGAGGGGCTCAATTTCAATCAAGTATGCTGACTTTTCATGGGAAGATAATGTATCAAAACCAACACTGAGAAAAATAAATTTGGAGGTTAGACTTGGACAAAAGGTAGCTATTTGTGGAGAGGTTGGATCAGGCAAATCAACTCTCTTAGCAGCAATTCTCAGAGAAGTTCCTTGTACTCAGGGAACTATTGATGTTTATGGGAAGTTTGCCTATGTTTCTCAAACAGCATGGATACAGACAGGAACAATAAGGGAAAATATATTGTTTGGATCATCTATGGATGCTGAAAAATATCAGGAAACACTTCATAGATCTTCACTAGTGAAGGATCTTGAGTTGTTTCCCCATGGTGATCTCACTGAAATAGGAGAAAGAGGGGTGAACCTGAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCGCGTGCTCTGTATCAGAATGCTGATATATATCTATTGGATGATCCATTTAGTGCTGTGGATGCACAAACTGCCACAAATTTGTTTACTGAATACATTATGGAAGGACTTGCTGGGAAGACAGTCTTGCTCGTGACTCATCAAGTTGACTTCCTTCCAGCATTTGATTCTGTTTTGTTGATGTCAGATGGGGAAATCATACAATCTGCTCCTTATCACCATTTGTTGATCTCAAGCCAAGAATTTCAAGATCTTGTGAATGCTCACAAAGAGACTGCTGGTTCTGACCGGCTTGTGGATGCTACTTCTTCACATAGACATTCAAATTGTGCTATAGAGATCAGGAAAACATATGTGGAGAAGGAGAAGCAGTTTGAAGCATCAAAAGGTGATCAATTGATTAAGCAGGAAGAGAGAGAGCAAGGAGACCAAGGGTTCAAGCCTTACTTACAGTATCTGAATCAGAACAAAGGATATCTATACTTTTCTGTGGCTTCTCTTTGTAACCTTGTATTTGTGATTGGCCTGATATTGCAAAACTCATGGATGGCTGCTAATGTTGACAATCCTCAAGTTAGCACTTTGAGATTGATTCTAGTTTACTTGTTGATTGGAGTTACTTCAACATTATTTTTATTGATCAGAAGTCTTCTTACAGTTGCTTTGGGCCTTCAATCATCAAAGTCTTTATTTTTACAGCTTCTGAACTCCCTTTTTCGTGCACCCATGTCATTTTATGACTCTACACCTTTGGGAAGGATACTTACTAGGGTCTCCTCTGATCTCAGCATTGTTGATCTTGATCTCCCGTTTATCTTTCTTTTTGTTGTGGTAGCTACTATGAGTTGTTATGCCAGTCTTACAGTTTTAGCAGTTGTTACTTGGCAAGTCTTGTTTGTCTCCATACCAATGATTTATTTTGCATTTCGCTTGCAGAAATATTACTTTGCATCTGCAAAAGAACTGATGAGGATGAATGGCACAACAAAATCCTTTGTTGCTAACCATCTTGCTGAATCTGTTGCTGGAGCTGTGACAATAAGGGCTTTTGAGGAGGAAGATCGTTTTTTCGCTAAAAATCTTGAACTAATTGATGTCAATGCTAGTCCTTTTTTCCATAGTTTTGCAGCAAATGAGTGGTTGATTCAACGGTTAGAAACAGTTAGTGCAGTTGTTCTTGCATCTGCAGCACTTTGCATGGTTGTACTTCCACCTGGGACATTCACCTCTGGATTTATTGGCATGGCTCTCTCTTATGGCCTTTCACTTAATGCTTCTTTAGTATTTTCAATTCAACATCAATGCGATATAGCAAATTATATAATATCAGTAGAGAGGCTAAATCAATATATGCATATACCAAGTGAGGCCCCAGAAGTAATAGAAGGAAATCGTCCTCCTGTTCATTGGCCAGTTGCTGGTAGAGTAGAAATAAATGAACTGCAGATACGATACAGGCCTGATGCACCACTTGTACTCCGTGGGATCACATGCACATTTGAAGGAGGGCACAAAATTGGTATTGTTGGCCGAACAGGCAGTGGCAAGTCCACTCTTATTGGTGCCTTATTCCGTCTTGTGGAGCCAGCAGGTGGAAAAATCATAGTTGATGGCATTGATATTTGCTCCATTGGTCTTCATGATTTGAGGTCACGTTTTGGTATTATACCTCAAGATCCTACTCTCTTTAATGGGACAGTCAGATACAATTTGGACCCATTATCTCAACACTCTGATCAAGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTGCAAGAGGCTGTCCAAGAGAAAGAAGGGGGCTTAGACTCCTCAGTTGTGGAAGATGGGGCAAACTGGAGCATGGGACAACGACAGTTATTCTGTTTGGGGCGTGCTCTTCTAAGGAGAAGTCGGATATTGGTGCTGGATGAAGCAACTGCATCAATTGATAATGCAACTGATTTGATTCTGCAGAAAACCATTAGGACTGAGTTTGCAGATTGTACAGTAATCACAGTAGCTCACAGGATACCAACTGTGATGGATTGCACTAAGGTCCTTGCCATTAGTGATGGAAAACTGGTAGAGTATGATGAGCCAATGAACTTGATGAAGAGAGAAGAATCGCTGTTTCGGAAGCTTGTCAAAGAATACTGGTCTCATTTTAAGTCTGCAGAATCTCATTGA 4455 0.3971 MEGFWSVFCGESGCSESGTKHCSYDFKFLIDPSACINHLFISCFDVLLLIMLLVIMIHKSSLKPFEGLTQVQRYSNLQLVSATVNGALGLLHLFLGIWVLEEKLRKSQTVLPLNLWLLEFFQGLTWLLVGLTISLKLKKQLPRTWLRLFSILILLVSGVFCALSLFYAFCSRELSLKLALDVLSFPGALLMLLCTYKEYKYRDTDKEIDESLYTPLNGESNKNDSISYVNVTLFANAGFFSKMSFWWLNPLMKRGKEKTLQDEDVPKLREEDRAESCYLLFLDHLNKQKQKDSSSQPSALRTIVLCHWREILISGFFALLKVLALSSGPLLLNSFILVAEGNESFKYEGFVLAISLFLIKIVESLSQRQWYFRSRLIGVKVRSLLTAAIYRKQLRLSNSARLMHSGGEIMNYVAVDAYRIGEFPYWFHQTWTTSFQLCISLVLLYHAVGLATVATLVVIVITVLCNTPLAKLQHKFQTKLMVAQDERLKASSEALVNMKVLKLYAWETNFKNVIEGLRNVELKWLSAVQLIKAYNSFLFWSSPVLVSAASFGACYFLNVPLHANNVFTFVATLRLVQEPIRTIPDVIGVVIQAKVAFTRIVKFLEAPELQNENVSKRCFDDNMRGSISIKYADFSWEDNVSKPTLRKINLEVRLGQKVAICGEVGSGKSTLLAAILREVPCTQGTIDVYGKFAYVSQTAWIQTGTIRENILFGSSMDAEKYQETLHRSSLVKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAQTATNLFTEYIMEGLAGKTVLLVTHQVDFLPAFDSVLLMSDGEIIQSAPYHHLLISSQEFQDLVNAHKETAGSDRLVDATSSHRHSNCAIEIRKTYVEKEKQFEASKGDQLIKQEEREQGDQGFKPYLQYLNQNKGYLYFSVASLCNLVFVIGLILQNSWMAANVDNPQVSTLRLILVYLLIGVTSTLFLLIRSLLTVALGLQSSKSLFLQLLNSLFRAPMSFYDSTPLGRILTRVSSDLSIVDLDLPFIFLFVVVATMSCYASLTVLAVVTWQVLFVSIPMIYFAFRLQKYYFASAKELMRMNGTTKSFVANHLAESVAGAVTIRAFEEEDRFFAKNLELIDVNASPFFHSFAANEWLIQRLETVSAVVLASAALCMVVLPPGTFTSGFIGMALSYGLSLNASLVFSIQHQCDIANYIISVERLNQYMHIPSEAPEVIEGNRPPVHWPVAGRVEINELQIRYRPDAPLVLRGITCTFEGGHKIGIVGRTGSGKSTLIGALFRLVEPAGGKIIVDGIDICSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHSDQEIWEVLGKCQLQEAVQEKEGGLDSSVVEDGANWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTKVLAISDGKLVEYDEPMNLMKREESLFRKLVKEYWSHFKSAESH. 1485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07316 1484 Pfam ABC transporter transmembrane region 935 1162 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g07316 1484 Pfam ABC transporter transmembrane region 311 577 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g07316 1484 FunFam ABC transporter C family member 3 1221 1473 - -
Seca8g07316 1484 Gene3D ABC transporter type 1, transmembrane domain 886 1219 IPR036640 GO:0005524|GO:0016020
Seca8g07316 1484 Gene3D ABC transporter type 1, transmembrane domain 283 609 IPR036640 GO:0005524|GO:0016020
Seca8g07316 1484 CDD ABC_6TM_ABCC_D1 313 600 IPR044746 GO:0140359
Seca8g07316 1484 Gene3D - 622 856 IPR027417 -
Seca8g07316 1484 SMART AAA_5 1264 1456 IPR003593 GO:0016887
Seca8g07316 1484 SMART AAA_5 654 827 IPR003593 GO:0016887
Seca8g07316 1484 Gene3D - 1222 1473 IPR027417 -
Seca8g07316 1484 FunFam ABC transporter C family member 10 295 608 - -
Seca8g07316 1484 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 622 850 IPR027417 -
Seca8g07316 1484 CDD ABC_6TM_ABCC_D2 920 1213 IPR044726 GO:0140359
Seca8g07316 1484 CDD ABCC_MRP_domain2 1236 1456 - -
Seca8g07316 1484 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1227 1471 IPR027417 -
Seca8g07316 1484 Pfam ABC transporter 645 779 IPR003439 GO:0005524
Seca8g07316 1484 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 312 592 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g07316 1484 CDD ABCC_MRP_domain1 627 827 - -
Seca8g07316 1484 ProSitePatterns ABC transporters family signature. 752 766 IPR017871 GO:0005524|GO:0016887
Seca8g07316 1484 FunFam ABC transporter C family member 5 887 1219 - -
Seca8g07316 1484 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 235 1472 - -
Seca8g07316 1484 Pfam ABC transporter 1255 1403 IPR003439 GO:0005524
Seca8g07316 1484 FunFam ABC transporter C family member 10 610 863 - -
Seca8g07316 1484 SUPERFAMILY ABC transporter transmembrane region 300 605 IPR036640 GO:0005524|GO:0016020
Seca8g07316 1484 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1240 1472 IPR003439 GO:0005524
Seca8g07316 1484 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 629 850 IPR003439 GO:0005524
Seca8g07316 1484 SUPERFAMILY ABC transporter transmembrane region 912 1218 IPR036640 GO:0005524|GO:0016020
Seca8g07316 1484 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 934 1201 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07316 Seca-Chr8 169807877 169814771 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07316 608 838 Calmodulin-binding Proteins AT2G36910 30.769 4.06e-28 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07316 K05666 - gmx:100811468 2498