Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07305 ATGGCTTTGGCTTCATCATCAACAACAACTAAACAAGTTGGTGGTCAAAGGTTGCTTCTTTTAGATGGCTTCCCCGATTGGCTATCTTCTTCAGATAGAAAGCTTCTTCAGACAACACCAAAAGCTGATATTGTGGTGGCTCAAGATGGCACTGGGAATTATAAGACTATATCAGAAGGTGTGACTGCAACTGCTAAGCTTAGTGGAAAAGGGGGAGTTGTTATTCACGTCAAAGCAGGTGTTTATAAAGAGAGTGTTGACATTAAGAGGTCAATGAAGAACTTGATGATCATTGGAGATGGGATGAGTTCCACTATTGTTACTGGTAATAATAACGCAAAAGATGACTCAACTACGTTTCGTTCAGCCACTTTCAGGAATAAAGAAGAAATACCTGCTACGGGAATAAAGCTCCTGAGGAAGTCAACAATGGCGGACTGA 441 0.4104 MALASSSTTTKQVGGQRLLLLDGFPDWLSSSDRKLLQTTPKADIVVAQDGTGNYKTISEGVTATAKLSGKGGVVIHVKAGVYKESVDIKRSMKNLMIIGDGMSSTIVTGNNNAKDDSTTFRSATFRNKEEIPATGIKLLRKSTMAD. 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07305 146 ProSitePatterns Pectinesterase signature 1. 69 88 IPR018040 -
Seca8g07305 146 PANTHER PECTINESTERASE 18 127 - -
Seca8g07305 146 Pfam Pectinesterase 43 127 IPR000070 GO:0030599|GO:0042545
Seca8g07305 146 Gene3D - 37 139 IPR012334 -
Seca8g07305 146 SUPERFAMILY Pectin lyase-like 38 127 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07305 Seca-Chr8 169710362 169710802 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07305 14 125 Carbohydrate Esterase AT1G23200 57.983 1.11e-37 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07305 - - gmx:100816802 191.045