Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07299 ATGGATTTAGTTGAAGGCGTGGGAGAGAGCTCCTCGCCCCCGCGCACCTTCAGCGGTTACAGCAACTACGATGTGAGGAACGACGTGTACAATCGCTTGGTAGAAACTGGCCACGACCAAGCCGTGTCGAATCCCGAGTTTCGTGAACAGTTGGAAGCTCACTTCAATCGCTTGCCTCCAAGTTATGGACTTGATGTTAATATCGATAGAGCTGAAGATGTTCTATTGCATCAGAGACTTCTTGCTTTGGCAAAAGACCCAGACAAGCGCCCCGTCTACCATATACGCTTCGTGGAGGATATTTCTACTAGAACAGATGGTGAAGAGCAGCAACTTGTAAGTACTCATCCTAGCCTAGGGTCATCTTCTCATTCAACAAATGGTGGAGCTGTGTCATCTCGTAAGAGGACCAGGGATCTTGCAGCTGAGTTTGAGCCTTGCTCAAAGCTTGAGGACCTAAATTTGGATGTTATAAAGAACTCAAAGGAGACAGAGGAAAATTTTCCTACTGACAACTTTTGCCAGAGGCATGAACATTCAAGTGTCCCAGTTCATGAAATAATATTTTCCACTGTTGACAAGCCCAAGCTTTTAAGCCAGCTGTCCGCATTGCTGTCTGATATTGGGCTTAACATCCGTGAAGCCCATGTTTTTTCCACAACTGATGGCTTCTCCCTTGACGTCTTTGTGGTGGATGGATGGCCTGTAGAGGAAACAGATGGTTTGTATGATGCTATGCAAAAAGCTGTAGCAAGAAGTGAGGGGTCATGGTCTCGTTCTTCAAATTCTCATTCAGCTGTGGAGAAAGCCTTAGCAGCAGAAGGAAAATCTGGAGATTGGGAAATAGACAGGAGGTTGTTAAAGATTGGAGAAAGAATAGCATCTGGATCCTGTGGAGATTTGTATCGTGGAGTTTATCTTGGTGAAGATGTTGCTGTCAAGGTTCTAAGATCCGAGCAACTGAATGATGCCTCAGAGGATGAGTTTGCTCAAGAAGTGGCTATTCTGAGGCAGGTGCATCATAAAAATGTTGTCCGTTTCATTGGCGCTTGTACAAAGTGTCCACATTTGTGCATAGTAACAGAGTATATGCCTGGAGGAAGTCTATATGATTACTTGCACAAAAATCATAATGTCTTGGAGCTGTCTCAATTACTAAAGTTTGCAATTGATGTCTGCAAGGGTATGGAGTATTTGCATGGAAACAACATAATTCACAGGGATCTGAAGACGGCCAACTTGCTAATGGATACGCACAGTGTTGTTAAAGTGGCAGATTTTGGAGTTGCTCGGTTCCTAAATCAGGGGGGAGTGATGACAGCGGAAACGGGAACATATAGATGGATGGCACCAGAGGTTATAAACCATCAGCCCTATAATCAAAAAGCAGATGTATTCAGTTTTTCCATAGTATTATGGGAACTAGTGACAGCAAAGGTACCATATGATACCATGACTCCTCTACAAGCTGCCTTGGGTGTAAGACAGGGACTGCGTCCAGAACTTCCAAAGCATGGGCACCCTAAACTATTAGATTTGATGCAAAGATGCTGGGAAGCAATTCCAAGCAACCGCCCATCCTTTAATGAGATAAGAGTTGAACTTGAAAATCTTTTGCAAGAAATGGAGGTAAACTGTGTTAACTGTTATTTATTAAATATTATTACATCTTTTGTTACTTGA 1683 0.4337 MDLVEGVGESSSPPRTFSGYSNYDVRNDVYNRLVETGHDQAVSNPEFREQLEAHFNRLPPSYGLDVNIDRAEDVLLHQRLLALAKDPDKRPVYHIRFVEDISTRTDGEEQQLVSTHPSLGSSSHSTNGGAVSSRKRTRDLAAEFEPCSKLEDLNLDVIKNSKETEENFPTDNFCQRHEHSSVPVHEIIFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGFSLDVFVVDGWPVEETDGLYDAMQKAVARSEGSWSRSSNSHSAVEKALAAEGKSGDWEIDRRLLKIGERIASGSCGDLYRGVYLGEDVAVKVLRSEQLNDASEDEFAQEVAILRQVHHKNVVRFIGACTKCPHLCIVTEYMPGGSLYDYLHKNHNVLELSQLLKFAIDVCKGMEYLHGNNIIHRDLKTANLLMDTHSVVKVADFGVARFLNQGGVMTAETGTYRWMAPEVINHQPYNQKADVFSFSIVLWELVTAKVPYDTMTPLQAALGVRQGLRPELPKHGHPKLLDLMQRCWEAIPSNRPSFNEIRVELENLLQEMEVNCVNCYLLNIITSFVT. 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07299 560 Pfam Protein tyrosine and serine/threonine kinase 287 534 IPR001245 GO:0004672|GO:0006468
Seca8g07299 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 404 416 IPR008271 GO:0004672|GO:0006468
Seca8g07299 560 ProSiteProfiles ACT domain profile. 186 260 IPR002912 -
Seca8g07299 560 SMART serkin_6 287 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07299 560 Gene3D Phosphorylase Kinase; domain 1 276 364 - -
Seca8g07299 560 CDD STKc_MAP3K-like 293 531 - -
Seca8g07299 560 ProSiteProfiles Protein kinase domain profile. 287 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07299 560 MobiDBLite consensus disorder prediction 105 137 - -
Seca8g07299 560 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 147 541 - -
Seca8g07299 560 PRINTS Tyrosine kinase catalytic domain signature 361 374 IPR001245 GO:0004672|GO:0006468
Seca8g07299 560 PRINTS Tyrosine kinase catalytic domain signature 398 416 IPR001245 GO:0004672|GO:0006468
Seca8g07299 560 PRINTS Tyrosine kinase catalytic domain signature 444 454 IPR001245 GO:0004672|GO:0006468
Seca8g07299 560 PRINTS Tyrosine kinase catalytic domain signature 506 528 IPR001245 GO:0004672|GO:0006468
Seca8g07299 560 PRINTS Tyrosine kinase catalytic domain signature 463 485 IPR001245 GO:0004672|GO:0006468
Seca8g07299 560 SUPERFAMILY ACT-like 185 252 IPR045865 -
Seca8g07299 560 SUPERFAMILY Protein kinase-like (PK-like) 277 544 IPR011009 -
Seca8g07299 560 MobiDBLite consensus disorder prediction 107 133 - -
Seca8g07299 560 Gene3D Transferase(Phosphotransferase) domain 1 365 550 - -
Seca8g07299 560 FunFam Serine/threonine-protein kinase isoform 1 277 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07299 Seca-Chr8 169558723 169579129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07299 24 544 MAP Kinase Kinase Kinase AT2G17700 51.124 1.14e-180 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca8g07299 PK_Tyr_Ser-Thr 9.6e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07299 - - gmx:100797987 978.778