Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07298 ATGTCTTTCAATATTCCAATATGCACCGGGCGGTTAGTCAACAATATCATCAAGCCTTCTATAGAAGAAGATAAGCATGAGAATATCCAAGAGAGCAATGGACATGTGAGCCTAACCATCACCAAGTGCACTGGGGAGACAGATGCTAATTTGGCTAAAATAATTACCAATTATGTGGGGACACTAAATCAAAACAAATTGCGCTTTTTGGGCTATCCCACTAATCTGGATTTCGATTATGCTGCATTGAAACCATTGTTGCAATTTCACCTAAACAATGCTGGCGATCCATTTCTAGGGAGCAGCTACTCTATGAATTCAACAGCATTTGAAGTGTGCGTACTTGACTGGTTTGCAAATTTGTGGGAGATAGAGAAGAGTGAGTATTGGGGATATGTCACAACTGGTGGAACTGAAGGCAATCTTCACGGCATTCTACTAGGGAGAGAACAATTTCCAGATGGGATCTTATATGCCTCAGAAGATTCACATTATTCAATATTCAAAATAGCAAGAATGTATCGAATGCAGTGCGTGAAGGTTGGCACTTTGGTGTCTGGTGAAATTGATTATGCTGAACTACATGCTTCACTACTTGCTCACAAGGACAAGCCAGCCATCATCAATCTAAACATAGGAACAACTATGAAAGGAGCTATTGATGATGTTGATCTCGTAATACAAACACTTGGGGAAAGTGGCTTCCCTCGCAATCGATTCTATATTCACTGTGATGGAGCTCTATTTGGAATGATGTTGCCGTTTCTTAAAAAAGCTCCAAGGACTACCTTCAAGAAGCCCATTGGAAGTATAGCCATTTCTGGCCATAAGTTCTTTGGATGCCCAATTCCTTGTGGTGTTGTAATAACTCGTTTAGAACATATAAATGTTCTATCTAAAGATGTTGAATACATTGCTTCAAAGGATGTCACAATCACGGGTAGCCGTTGTGGGCATGCTCCAATGTTCCTCTGGTATGCTATCCAAGAGAGAGGTTTAATAGGATTTGAGAAGGAAGTGGAAATGTGCATCATGAATGCACGTCACTTACTGGATCAACTACGTCATGCTGGCATTGGTGCAATGTTGAATGAGTTTAGTAATACAGTTGTTTTTGAAAGGCCTCTTGATGATGAATTTACAAGTAGGTGGAGTTTGGCTTGCAAAGGTAATATTGCACATGTGGTTGTAATGCAACATGTCACTATTGAAATGCTAGACTCTTTTGTTGTTGAATTAGTTCAACAACGACTCATTTGGTATCGAGATGGACTAAGAAAGCCTCCTTGCATTGCAAGTGATATTGGTGCAGAAAATTGTGCTTGTACATTGCATAATTCATTCTCATAG 1350 0.3985 MSFNIPICTGRLVNNIIKPSIEEDKHENIQESNGHVSLTITKCTGETDANLAKIITNYVGTLNQNKLRFLGYPTNLDFDYAALKPLLQFHLNNAGDPFLGSSYSMNSTAFEVCVLDWFANLWEIEKSEYWGYVTTGGTEGNLHGILLGREQFPDGILYASEDSHYSIFKIARMYRMQCVKVGTLVSGEIDYAELHASLLAHKDKPAIINLNIGTTMKGAIDDVDLVIQTLGESGFPRNRFYIHCDGALFGMMLPFLKKAPRTTFKKPIGSIAISGHKFFGCPIPCGVVITRLEHINVLSKDVEYIASKDVTITGSRCGHAPMFLWYAIQERGLIGFEKEVEMCIMNARHLLDQLRHAGIGAMLNEFSNTVVFERPLDDEFTSRWSLACKGNIAHVVVMQHVTIEMLDSFVVELVQQRLIWYRDGLRKPPCIASDIGAENCACTLHNSFS. 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07298 449 Pfam Pyridoxal-dependent decarboxylase conserved domain 106 365 IPR002129 GO:0016830|GO:0019752|GO:0030170
Seca8g07298 449 Gene3D - 85 328 IPR015421 GO:0003824
Seca8g07298 449 Gene3D Aspartate Aminotransferase, domain 1 329 417 IPR015422 GO:0003824
Seca8g07298 449 SUPERFAMILY PLP-dependent transferases 65 414 IPR015424 -
Seca8g07298 449 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 270 291 IPR021115 GO:0016831
Seca8g07298 449 PANTHER - 30 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07298 Seca-Chr8 169552242 169554985 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07298 212 358 Calmodulin-binding Proteins AT3G17760 27.950 1.64e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07298 K25193 - gmx:100781665 662.914