Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07297 ATGCATTCCAATATTGCAGCAGTTCATGCCACAGAGCGGTTACCAAGTTTGGTTGGCAATGGGAATGCAAAGCCCTCAAGAGAAGAGAAGCGAAGAGAAAATAATGAACTTACTAACCTCGCCATCAGCATGTGCACTGTGAAGACAGAGGCCAATTTGGTTAAAATAATTAACCACTACGTGGAGAGACTAAATCAAAACAAATTGCGCCTTTTGGGCTACCCGGGCAATCAGGACTTCAATTATGACGCATTGACACCATTGTTGCATTTTCACCTCAACAATGCTGGTGATCCATTTCAAATGTGTTCTTATGATATGAATTCAACCGAGTTTGAAGTTTGCGTGCTTGATTGGTTTGCAAACTTGTGGGAGATAGAGAAGGGTGAATATTGGGGATATGTTACAACTGGTGGAACTGAAGGAAATCTTCATGGGATCTTAATGGGAAGGGAAAGGTTTCCAGATGGGATTTTATATACCTCACAGGACTCACATTATTCATTATTCAAAATAGCAAGAATGTACAGAATGCAATGCGTGAAGGTCAACACTTTGGTCTCTGGTGAGATTGATTGTGTTAATCTAAAGGCTTTACTTCTTGCTCATAAGGACAAGCCGGCCATTATCAATCTAAACATAGGTCTTCCTCTTATCTTTGACAAGCAAAAATTAGGAACAACTATGAAAGGAGGTGTTGATGATCTTGATCTTGTAATACAAACACTTGAGGAAAGTGGTTTCCCTCGTGACAGATTCTATATTCATTGTGATGGAGCTTTATTCGGAATGATGCTTCCATTTCTTGAACCGACTCCAAGGATTACCTTTAAGAAGCCTATCGGAAGTATAGCCATTTCTGGCCACAAGTTCTTGGGATGCCCAATTCCTTGTGGTGTTGTAATATCACGTTCAGAACACACCAATGCTCTATCAAGAGATGTTGAATACATTGCTTCAAGAGATATCACAATCACAGGTAGCCGTTGTGGGCATACTCCAATCTTCATCTGGTATGCTCTTCAAAAGAAAGGTTTATTAGGACTCAAGAAAGAAGTACATAAGTGCATCATGAATGCACACTATTTATTGGATCAACTACGTGCTGAAGGCATTAGTTCGATGTTGAATGAGTTTAGTAATACGGTTGTCTTCGAAAGGCCTCTAGATGAAGATTTTACATATAGATGGAATTTGGCTTGCGAAGGTAATATCGCACACGTGGTTGTGATGCAACACCTCACCGTTGAAATGCTAGACTCCTTTGTTGCTGAACTTATACAAAAACGATCCATTTGGTACAAAGATGGACTGAGAAAACCTCCATGCATTGCAAACGACATTGGTGTTGAGAATTGTGCTTGTACATTGCAGAATTCATTCTCATGTGAAGGAATGCATGACCAATTAATATATGTATGA 1422 0.3973 MHSNIAAVHATERLPSLVGNGNAKPSREEKRRENNELTNLAISMCTVKTEANLVKIINHYVERLNQNKLRLLGYPGNQDFNYDALTPLLHFHLNNAGDPFQMCSYDMNSTEFEVCVLDWFANLWEIEKGEYWGYVTTGGTEGNLHGILMGRERFPDGILYTSQDSHYSLFKIARMYRMQCVKVNTLVSGEIDCVNLKALLLAHKDKPAIINLNIGLPLIFDKQKLGTTMKGGVDDLDLVIQTLEESGFPRDRFYIHCDGALFGMMLPFLEPTPRITFKKPIGSIAISGHKFLGCPIPCGVVISRSEHTNALSRDVEYIASRDITITGSRCGHTPIFIWYALQKKGLLGLKKEVHKCIMNAHYLLDQLRAEGISSMLNEFSNTVVFERPLDEDFTYRWNLACEGNIAHVVVMQHLTVEMLDSFVAELIQKRSIWYKDGLRKPPCIANDIGVENCACTLQNSFSCEGMHDQLIYV. 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07297 473 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 283 304 IPR021115 GO:0016831
Seca8g07297 473 Gene3D Aspartate Aminotransferase, domain 1 335 430 IPR015422 GO:0003824
Seca8g07297 473 SUPERFAMILY PLP-dependent transferases 77 428 IPR015424 -
Seca8g07297 473 Gene3D - 103 331 IPR015421 GO:0003824
Seca8g07297 473 PANTHER - 25 459 - -
Seca8g07297 473 Pfam Pyridoxal-dependent decarboxylase conserved domain 109 382 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07297 Seca-Chr8 169513422 169519437 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07297 225 359 Calmodulin-binding Proteins AT1G65960 29.530 7.27e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07297 K25193 - gmx:100781665 674.47