Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07289 ATGGTGGTCAGCAGCAATGGCAAGCCCTCTAGAGAAGAAGAGAAGCAGAGAGAAATTCAAGAGAATATGAGCCTTGCTATCACCACGTGTACCGGGGAGACGCAGGACAAATTGAGGGAAGTAATTACCAACTACGTGGGGACCCTAAATAAAAAACAATTACACCTTTTGGGCTATCCCACTAATCAACACTTCGACTATGATGCATTGGCACCATTGTTGAATTTTCACCTAAACAATGCTGGTGATCCATTTATAGGGAGCAGTTTTGGTCTAAATTCATCAGAATTTGAAGTTTGTGTGCTTGATTGGTTTGCCAACTTATGGGAGATAGAGAAGGGTGAGTATTGGGGATACGTCACAACTGGTGGAACTGAAGGAAATCTTTATGGAATTTTATCAGGGAGGGAACAATTTCCAAATGGTATTTTATATACCTCAGAGGACTCACATTATTCAATATTCAAAATAGCAAAAATGTATAGGATGCAATGTGTAAAAGTTGGCACGTTGGTCTCTGGTGAGATAGATTGTGTTGATCTAAAGACTTTACTCCTTGCTCATAAGAACAAGCCAGCCATTATCAATCTAAACATTGGAACAACTATGAAAGGAGCTGTTGATGACATTAATCTCGTAATACAAACACTTGAGGAAAGTGGCTTCTCTCGTGATCGATTTTATATTCACTGTGATGGAGCTCTATTTGGAATGATGCTTCCATTTCTTGAACAAGGTCCAAAGATTACATTCAAGAAGCCCATTGGAAGTATAACCATTTCGGGCCATAAATTCTTGGGTTGCCCAATTCCGTGTGGTGTTGTAATAACTCGCTCAGAACACACCAACACTCTATCTGGAGATGTTGAAGTGATTGCTTCTAGGGATGCCACAATCACAGGCAGCCGAAGTGGGCATGCTCCAATCTTCATTTGGTATGCTCTGCAAAAGAAAGGGTTAATAGGTCTCAAGAATGAGGTGCAGAAATGCATAACTAATGCACAATACTTATTTGGTCAACTGCGTGGAGCTGGCATTGGCACAATGTTAAATGAATTTAGCAGCACGGTTGTCTTTGAGAGGCCTTTAGAAGATGACTTTGCTCGTAGGTGGAATTTAGCATGCAAAGGAAATATTGCACATGTGGTGGTGATGCAACATGTTACTATTAAAATCTTGGACTTCTTTGTTAGTGAACTCATACAAAAGCGAGAGATTTGGTTCCAAGATGATTTGAGAAAGCCTCCCTGCCTTGCAAATGAAATTGGTGCTGGAAATTGTTCTTGTATATTGCATGATTGA 1302 0.4025 MVVSSNGKPSREEEKQREIQENMSLAITTCTGETQDKLREVITNYVGTLNKKQLHLLGYPTNQHFDYDALAPLLNFHLNNAGDPFIGSSFGLNSSEFEVCVLDWFANLWEIEKGEYWGYVTTGGTEGNLYGILSGREQFPNGILYTSEDSHYSIFKIAKMYRMQCVKVGTLVSGEIDCVDLKTLLLAHKNKPAIINLNIGTTMKGAVDDINLVIQTLEESGFSRDRFYIHCDGALFGMMLPFLEQGPKITFKKPIGSITISGHKFLGCPIPCGVVITRSEHTNTLSGDVEVIASRDATITGSRSGHAPIFIWYALQKKGLIGLKNEVQKCITNAQYLFGQLRGAGIGTMLNEFSSTVVFERPLEDDFARRWNLACKGNIAHVVVMQHVTIKILDFFVSELIQKREIWFQDDLRKPPCLANEIGAGNCSCILHD. 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07289 433 Gene3D - 74 314 IPR015421 GO:0003824
Seca8g07289 433 SUPERFAMILY PLP-dependent transferases 38 403 IPR015424 -
Seca8g07289 433 PANTHER - 8 432 - -
Seca8g07289 433 Gene3D Aspartate Aminotransferase, domain 1 315 405 IPR015422 GO:0003824
Seca8g07289 433 Pfam Pyridoxal-dependent decarboxylase conserved domain 95 345 IPR002129 GO:0016830|GO:0019752|GO:0030170
Seca8g07289 433 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 257 278 IPR021115 GO:0016831
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07289 Seca-Chr8 169377800 169381075 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07289 199 337 Calmodulin-binding Proteins AT3G17760 27.451 3.62e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07289 K25193 - gmx:100784867 680.248