Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07281 ATGGGGAGGAAGAAGCCGACAGCACGGGACGAAGAGAATCCCTCGCAGCAAGGTGGTGGGAAATCGAAGAAGAAGGCTCTCGTCATCGACGATGATGAGTACTCTGTTGGAACCGAGCTCTCGGAGGAGCCTCCCCCGGCACCGGAAGAGAAGCCTGCTGGGAAGAAGAAAGGTAAAAAAGGTAACGCTAAAGCTGCACAAGCTAGAGATAATGATGATGATGACGTTGATGATGATGAGGATGTCCCTGAGGTTGTGTTTGCTGGGAAAAAGAAGGGGAAATCGAAGAAGGGTGGTGCGTTCACTGGGTCTAGCTTTGGTTTGCTTGGTGATGGTGACGATGATGAAGAGAAATCGGGGTTAACCGGTGGACGAGATGACGAGGAGGAGGATGAACCAGTGGTTAGTTTTTCAGGTAAAAAGAAGTCTTCAAAGGGTTCAAAGAAAGGCGGTGGTAGTTTGTTCACTGCTTCAGCTTTTGATGCTATTGATGATGATAACGATAACGATGGTGTGGAGGAGGATGAACCTGTGGTTAGTTTTTCAGGTAAGAAGAAGCCCTCAAAGGGTTCAAAGAAAGGTGGTGGTAGTTTGTTCAATGCCTCGGCATTTGATGCTATTGATGATGGCAAAGACGAGAATGATGATGTTGATGAACCTGTTATTGCTTTTACAGGGAAGAAGAAGTCTTCCAAAGGAAGTAAGAAGGGTGGTTCTTTGTTTTCAGCTGCTAGTTTTGGTGAGATTGATGATGGAGAGGAGGCTAAGGATGAAAAGGAAGATGATGATGATGATATAGGGCCAATCACTTTCTCAGGTAAGAAAAAGAAGTCATCGAAGTCTTCAAAGAAGGCAGCTTTTCCCGATGAGGATAGTGTGTCTGTACCTGAGTCTGCTAAAGGTGGTGATGGCAAGGATGAAGATGATGATTCTATAGTTGCGTTTTCAGGTAAAAAGAAGTCTTCCAAAAAGAAAAGCAGTAGTACTGCTGCCAAAGTGAGGGATGAAAGTGTAGATATTGTTGAGCCTGAGCAGCCTAGTGTTGGAATTAGTAATACTAATGCTGACAACAGCAACATTAATAAGAGTGAAGAGATAACTGAAACTTCCAAAAATAAGAAAAAGAATAAGAAGAAGAGTGGAAGAACTGCCCAAGAGGAGGAAGATTTAGATAAGATTCTTGCAGAGCTTGGTGAGGGCCCTTCTGTAGCAAAACCTGCTGCTCCTCTACCGCAGGATGATAAAGTTCAGCCTACTCCGGAAGTAGGTTCTGCTGCTGATGCTTCAGGGGAAAAGGAGGGAGAAGAGGAGACTGTAGAGTCAGCTGCTGCAAAGAAGAAGAAAAAGAAGAAGGAAAAGGAAAAGGAGAAAAAGGCAGCTGCAGCTGCAACAGCAGCAACAGCAGCTGGAAGTGCACCAGAAAATGCAACTGTAGAAGTTAAAGCTGAGACAATTGAATCAAAGAAGAATGATTCAAAGACTAAAGCAGCTGACAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAGGCACTGGCTAGAAGAAAAGAGGCTGAAGAAAGGAAGAAAAGAGAAGAGGAGGAGAAGTTAAGGAAGGAAGAAGAGGAGCGACGTAGGCAAGAGGAACTTGAGAGACAGGCAGAAGAGGCTAGACGCAGAAAGAAGGAAAGAGAAAAGGAGAAACTCCAGAAAAAGAAGCAAGAAGGTAAACTGTTAACTGGTAAGCAGAAAGAAGAAGCCCGCCGATTGGAGGCAATGAGGAGGCAGATTCTCAATAACACAGGGGGTGTGACTCTTCCTACTGGGGACACTGGTGCTCCAGCCAAAAAACCCATATATCAAACAAAGAAGTTAAAACCAAACAATCGTAATCAGAATGGTGCTCCTGCTGTTCAGACAGCTGAAACTATTGAAGTAAAGGAGACTACCACTGATGTGAGTTCAGAGGAAACAAAAAAGGTTGAAGAAGTGGAGACCATGCATATGGAGAACAAAGTTAAACCTCCTGAAGCTGTTGAAGAGGATGGAGTGGAAGAAGATGATGAAGAGGATGAATGGGATGCAAAAAGTTGGGATGATGTTAATCTGAATGCTAAAGGCGCATTTGCTGATGAAGAGGCTGACTCAGAGCCTGAACCAATTGTCAAAAAGGAGATTAAAAGTGCAGTACCTGCTAACAATGCTGGTGAGATTTGCAATTCACTGATTCTTTTTCTTTACACTATTATTTTTGAAAATTCTGTAATGACTGAAAATAACAAGCTTGATAGACAGCAGGCTGTAGACAAAAGTAGAAAGCAAGATTCAGGTTCGAAAAGAGAACCACAAAAGTCTGCGGGGCCTTCTAAGCCGAGTGATGAGAACCTTCGCTCCCCAATTTGCTGTATTATGGGGCATGTGGACACTGGTAAAACCAAGCTGCTGGATTGTATTCGAGGTACTAATGTTCAAGAGGGTGAGGCTGGTGGAATCACACAACAGATTGGTGCAACATACTTTCCTGCGGAGAACATACGTGATAGAACAAAGGAGCTGAAAGCTGATGCAAAGCTGAAAGTTCCCGGTCTACTGGTTATTGATACCCCAGGGCATGAATCATTCACTAACTTAAGGTCTCGGGGTTCAGGTCTATGTGATATTGCCATTTTGGTTGTTGACATTATGCATGGCTTAGAGCCACAAACAATAGAATCACTCAATCTATTAAAAATGAGAAACACAGAATTCATTGTTGCCCTGAATAAGGTTGACAGGCTTTATGGGTGGAAATCATGTCGCAATGCTCCAATTGTTAAAGCAATGAAGCAGCAGTCTAAGGATGTTCAAAATGAGTTTAATATGAGGCTCGTTCAGATTATTACACAATTCAAGGAACAGGGTCTAAATACTGAGTTGTATTATAAAAACAAAGAAATGGGAGAAACATTCAGCATTGTGCCTACAAGTGCAATAAGTGGTGAAGGAATCCCAGATTTGTTATTACTATTGGTTCAGTGGACCCAAAAAACAATGGTTGAGAAACTTACATACAGTGAAGAAGTGCAGTGTACTGTTTTGGAGGTCAAGGTTGTTGAAGGACATGGAACTACTATTGATGTTGTTTTAGTCAATGGCATTCTTCATGAAGGAGAACAGATAGTTGTCTGTGGAATGCAGGCAAGCGGTCCAATTGTTACCACGATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTGCGTGTTAAGGGGACATATCTCCATCACAAAGAAATCAAAGCTGCAATGGGTATAAAGATCACAGCTCAGGGGCTTGAACATGCTATTGCTGGCACTGGTTTATATGTGGTGAAGCCTGATGATGATTTGGAAGATGTTAAAGAAGCTGCTATGGAAGATATGCGGTCAGTCATGAGCAGGATTGACAGGAGCGGTGAGGGTGTTTGTGTACAAGCATCCACCCTTGGCTCATTGGAAGCATTACTGGAGTTTTTGAAAACCCCGGAAGTGAATATTCCTGTTAGTGGTATAAGCATAGGCCCTGTACATAAAAAGGATGTAATGAAGGCCAGTGTAATGCTTGAAAAGAAACGAGAGTATGCTACTATATTGGCTTTTGATGTCAAAGTCACTCCTGAGGCTAGGGAACTTGCAGATGAATTGGGTGTGAAAATTTTTATTGCTGATATCATTTATCATCTGTTTGATCAATTTAAAGCTTATATTGACAACATTAAGGAGGAGAAAAAGAGAGAAGCTGCTGATGAGGCAGTCTTCCCATGTGTTCTGAAAATCTTACCAAATTGCGTCTTCAACAAGAAGGATCCAATTGTTTTGGGAGTTGATGTCCTTGAAGGCATTGCAAAGGTTGGTACTCCAATATGTATTCCTTCTAGAGAGTTCATTGATATTGGTCGCATTGCCTCTGTTGAGAATAACCATAAACCTGTTGATTATGCTAAGAAGGGGCAGAAAGTCGCCATTAAGATTGTTGGCAGCAATCCTGAGGAGCAACAAAAAATGTTTGGGCGGCATTTTGAGATTGACGATGAACTTGTAAGCCATATTTCACGGAGATCTATCGATATACTCAAAGCTAATTATCGGGATGATCTGTCTACGGAGGAATGGAGGCTGGTCGTGAAATTGAAGAATCTTTTTAAGATACAATGA 4152 0.4244 MGRKKPTARDEENPSQQGGGKSKKKALVIDDDEYSVGTELSEEPPPAPEEKPAGKKKGKKGNAKAAQARDNDDDDVDDDEDVPEVVFAGKKKGKSKKGGAFTGSSFGLLGDGDDDEEKSGLTGGRDDEEEDEPVVSFSGKKKSSKGSKKGGGSLFTASAFDAIDDDNDNDGVEEDEPVVSFSGKKKPSKGSKKGGGSLFNASAFDAIDDGKDENDDVDEPVIAFTGKKKSSKGSKKGGSLFSAASFGEIDDGEEAKDEKEDDDDDIGPITFSGKKKKSSKSSKKAAFPDEDSVSVPESAKGGDGKDEDDDSIVAFSGKKKSSKKKSSSTAAKVRDESVDIVEPEQPSVGISNTNADNSNINKSEEITETSKNKKKNKKKSGRTAQEEEDLDKILAELGEGPSVAKPAAPLPQDDKVQPTPEVGSAADASGEKEGEEETVESAAAKKKKKKKEKEKEKKAAAAATAATAAGSAPENATVEVKAETIESKKNDSKTKAADKKVPKHVREMQEALARRKEAEERKKREEEEKLRKEEEERRRQEELERQAEEARRRKKEREKEKLQKKKQEGKLLTGKQKEEARRLEAMRRQILNNTGGVTLPTGDTGAPAKKPIYQTKKLKPNNRNQNGAPAVQTAETIEVKETTTDVSSEETKKVEEVETMHMENKVKPPEAVEEDGVEEDDEEDEWDAKSWDDVNLNAKGAFADEEADSEPEPIVKKEIKSAVPANNAGEICNSLILFLYTIIFENSVMTENNKLDRQQAVDKSRKQDSGSKREPQKSAGPSKPSDENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRDRTKELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKSCRNAPIVKAMKQQSKDVQNEFNMRLVQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTYSEEVQCTVLEVKVVEGHGTTIDVVLVNGILHEGEQIVVCGMQASGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAMGIKITAQGLEHAIAGTGLYVVKPDDDLEDVKEAAMEDMRSVMSRIDRSGEGVCVQASTLGSLEALLEFLKTPEVNIPVSGISIGPVHKKDVMKASVMLEKKREYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNIKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVLEGIAKVGTPICIPSREFIDIGRIASVENNHKPVDYAKKGQKVAIKIVGSNPEEQQKMFGRHFEIDDELVSHISRRSIDILKANYRDDLSTEEWRLVVKLKNLFKIQ. 1384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07281 1383 Pfam Elongation factor Tu domain 2 1028 1105 IPR004161 GO:0005525
Seca8g07281 1383 Gene3D Translation factors 1012 1134 - -
Seca8g07281 1383 MobiDBLite consensus disorder prediction 1 202 - -
Seca8g07281 1383 MobiDBLite consensus disorder prediction 300 317 - -
Seca8g07281 1383 MobiDBLite consensus disorder prediction 642 672 - -
Seca8g07281 1383 MobiDBLite consensus disorder prediction 223 688 - -
Seca8g07281 1383 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 789 1005 IPR000795 GO:0003924|GO:0005525
Seca8g07281 1383 Coils Coil 432 466 - -
Seca8g07281 1383 Gene3D - 1135 1239 IPR036925 -
Seca8g07281 1383 MobiDBLite consensus disorder prediction 673 688 - -
Seca8g07281 1383 FunFam Eukaryotic translation initiation factor 5B 783 1011 - -
Seca8g07281 1383 CDD IF2_eIF5B 792 1002 - -
Seca8g07281 1383 FunFam eukaryotic translation initiation factor 5B 1012 1133 - -
Seca8g07281 1383 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1116 1245 IPR036925 -
Seca8g07281 1383 NCBIfam small GTP-binding protein domain 794 918 IPR005225 GO:0005525
Seca8g07281 1383 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 789 1082 IPR027417 -
Seca8g07281 1383 MobiDBLite consensus disorder prediction 251 265 - -
Seca8g07281 1383 Pfam Elongation factor Tu GTP binding domain 793 1001 IPR000795 GO:0003924|GO:0005525
Seca8g07281 1383 MobiDBLite consensus disorder prediction 617 641 - -
Seca8g07281 1383 MobiDBLite consensus disorder prediction 755 789 - -
Seca8g07281 1383 Coils Coil 501 572 - -
Seca8g07281 1383 CDD aeIF5B_II 1013 1125 - -
Seca8g07281 1383 PRINTS GTP-binding elongation factor signature 873 884 IPR000795 GO:0003924|GO:0005525
Seca8g07281 1383 PRINTS GTP-binding elongation factor signature 909 918 IPR000795 GO:0003924|GO:0005525
Seca8g07281 1383 PRINTS GTP-binding elongation factor signature 793 806 IPR000795 GO:0003924|GO:0005525
Seca8g07281 1383 PRINTS GTP-binding elongation factor signature 857 867 IPR000795 GO:0003924|GO:0005525
Seca8g07281 1383 MobiDBLite consensus disorder prediction 428 447 - -
Seca8g07281 1383 Gene3D Translation factors 1246 1383 - -
Seca8g07281 1383 SUPERFAMILY Translation proteins 1250 1382 IPR009000 -
Seca8g07281 1383 FunFam Eukaryotic translation initiation factor 5B 1246 1383 - -
Seca8g07281 1383 Pfam Translation-initiation factor 2 1118 1232 IPR023115 -
Seca8g07281 1383 CDD IF2_aeIF5B_IV 1254 1349 - -
Seca8g07281 1383 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 484 1379 IPR015760 -
Seca8g07281 1383 MobiDBLite consensus disorder prediction 756 773 - -
Seca8g07281 1383 MobiDBLite consensus disorder prediction 111 125 - -
Seca8g07281 1383 FunFam Eukaryotic translation initiation factor 5B 1133 1239 - -
Seca8g07281 1383 Gene3D - 783 1011 IPR027417 -
Seca8g07281 1383 MobiDBLite consensus disorder prediction 481 586 - -
Seca8g07281 1383 MobiDBLite consensus disorder prediction 346 365 - -
Seca8g07281 1383 MobiDBLite consensus disorder prediction 380 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07281 Seca-Chr8 169268861 169279332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07281 218 1383 Eukaryotic Initiation Factors Gene Family AT1G76810 65.442 0.0 1227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07281 K03243 - gmx:100814875 1735.7