Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07275 ATGCTAGGAGACTCAACTGTGTTGAGAGGAGGAGGTGGTGGAGAAGGTGGTGGTTCCGGTGATGTAGCATCAGCAGTAGCACCAGCTGGAACAACAACCGTTGGATCAAATTCAGGCGATGAAGAGAGAGGAAAAATCGACGAAGGTGAACGTAGCTTCGGTGGCAACCGGTGGCCACGACAAGAGACTTTGGCGCTGTTAAGGATACGGTCAGATATGGACGTGGCGTTTCGAGATGCAAGTGTTAAAGGTCCCTTGTGGGAAGAAGTTTCTAGGAAATTGGCAGAGCTTGGTTATCACAGAAGTGCCAAGAAATGCAAAGAGAAATTTGAAAACGTATACAAGTACCACAAAAGAACCAAAGAAGGTCGAACTGGGAAATCAGATGGGAAAACATATCGTTTCTTTGATCAATTAGAAGCCCTTGAGAATCACCCTCCAATTCAATCTCCCAACCCATCAAAACCACCACCACCATTACCTGCACCACCACCACCACCATCACTAGTAGTAACAACCACCACAACCACAACAACAACAACAAATTCTTCAGCAGTGTCATCACTCCCAATCCCAACAACAACAAATTCTTCAGCAGTGCCAATGCCACCACCACAAGTGGCTAACACCACTACTACTCATGTAACTGTTCCATCAACAACCACACTCCCTATAGCAATGCCACAAGGCATTGCTGTAACAACCACCACCCCACCAATGAACCTCACAATCCCTTCTTACCCTCCAACAAACTTATTCCCAACATCCACAACAAACCCTACACCTCACACAACAATCCCAATCTCCTTCCCTAACATCCCAACAGATCTACTCTCCAATTCCACCTCATCCTCAACCTCATCCGATGAAACACTCGAAGGAAGGCGCATGAGGAAACGCAAATGGAAGGACTTCTTCGAGAGACTAATGAAGGAAGTCATAGAGAAACAAGAGGAATTACAAAAGAGATTCTTGGAAGCAATAGAGAAACGAGAACATGACAGAATGGTTAGAGAAGAAGCATGGAGAGTCCAAGAGATGCAAAGAATCAATAGAGAAAGAGAAATTCTAGCACAAGAAAGATCCATAGCTGCAGCTAAGGATGCTGCAGTTATGTCATTCTTGCAAAAGATAGCTGAACAGCAAAATCTTGGACAAGCATTGACTAACATCAACATCATACAACCACAACCAGTGTCACAGCCAATTGCAACACCAACACCACCACCACCACAACCACAACCACAATCAGTGCAACAACAACAGCCAATTGCAACACCACCACCACCACCAGTTGCTGTTGCTCAGCCTGTGATGTCAGCATTGGTCCCACAACAAGTAGTGACGAATATGGAAATTGTAAAAGCTGGTGGTGGTGGTGATAATGGGGAGAATTTGATGGGGGCGAGTTCTTCGAGGTGGCCAAAAGTGGAGGTTGAAGCACTGATAAAGCTGAGAACAAGCCTTGATGCTAAGTACCAAGAGAATGGACCGAAAGGTCCTCTTTGGGAGGAGATTTCATCCTCCATGAGGAAGCTTGGGTACAACAGGAATGCCAAAAGGTGCAAAGAAAAATGGGAGAATATCAATAAGTACTTCAAGAAAGTCAAGGAAAGCAACAAGAAGAGACCAGAAGATTCCAAGACATGTCCTTATTTTCACCAGTTGGATGCTCTATACAGGGAAAAGAACAAGCTTGATAGCCCTTCCATGAAGCCGGAAAACATGGGGCCGCCGTTGATGGTGCGGCCGGAGCAGCAATGGCCACCACAGCAGGATGTGACCATGGAAGACGCGGAGAGGCATCATCATGAAGATAATGAAGATGATAGAGATGGAGAAGAGGAAGAAGAAGAAGATGATGAAGAGGATGAAGGAAGTGGTGGTGGTGGAAACTATGAGATAGTGGCAAGCAAGCCTGCTGCTGCAACAGCATCAGCTGAGTAG 1947 0.4587 MLGDSTVLRGGGGGEGGGSGDVASAVAPAGTTTVGSNSGDEERGKIDEGERSFGGNRWPRQETLALLRIRSDMDVAFRDASVKGPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKEGRTGKSDGKTYRFFDQLEALENHPPIQSPNPSKPPPPLPAPPPPPSLVVTTTTTTTTTTNSSAVSSLPIPTTTNSSAVPMPPPQVANTTTTHVTVPSTTTLPIAMPQGIAVTTTTPPMNLTIPSYPPTNLFPTSTTNPTPHTTIPISFPNIPTDLLSNSTSSSTSSDETLEGRRMRKRKWKDFFERLMKEVIEKQEELQKRFLEAIEKREHDRMVREEAWRVQEMQRINREREILAQERSIAAAKDAAVMSFLQKIAEQQNLGQALTNINIIQPQPVSQPIATPTPPPPQPQPQSVQQQQPIATPPPPPVAVAQPVMSALVPQQVVTNMEIVKAGGGGDNGENLMGASSSRWPKVEVEALIKLRTSLDAKYQENGPKGPLWEEISSSMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYREKNKLDSPSMKPENMGPPLMVRPEQQWPPQQDVTMEDAERHHHEDNEDDRDGEEEEEEDDEEDEGSGGGGNYEIVASKPAAATASAE. 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07275 648 CDD GT1 56 121 - -
Seca8g07275 648 Gene3D - 58 119 - -
Seca8g07275 648 Gene3D - 474 535 - -
Seca8g07275 648 MobiDBLite consensus disorder prediction 610 628 - -
Seca8g07275 648 MobiDBLite consensus disorder prediction 40 55 - -
Seca8g07275 648 FunFam Trihelix transcription factor GT-2 474 535 - -
Seca8g07275 648 MobiDBLite consensus disorder prediction 595 609 - -
Seca8g07275 648 FunFam Trihelix transcription factor GT-2 58 119 - -
Seca8g07275 648 MobiDBLite consensus disorder prediction 171 203 - -
Seca8g07275 648 MobiDBLite consensus disorder prediction 149 170 - -
Seca8g07275 648 Pfam Myb/SANT-like DNA-binding domain 472 559 IPR044822 -
Seca8g07275 648 Pfam Myb/SANT-like DNA-binding domain 56 142 IPR044822 -
Seca8g07275 648 PANTHER FI21293P1 37 612 - -
Seca8g07275 648 MobiDBLite consensus disorder prediction 401 432 - -
Seca8g07275 648 ProSiteProfiles Myb-like domain profile. 472 530 IPR001005 -
Seca8g07275 648 MobiDBLite consensus disorder prediction 398 432 - -
Seca8g07275 648 SMART sant 54 116 IPR001005 -
Seca8g07275 648 SMART sant 470 532 IPR001005 -
Seca8g07275 648 CDD GT1 472 537 - -
Seca8g07275 648 Coils Coil 303 330 - -
Seca8g07275 648 MobiDBLite consensus disorder prediction 144 203 - -
Seca8g07275 648 MobiDBLite consensus disorder prediction 565 648 - -
Seca8g07275 648 MobiDBLite consensus disorder prediction 1 57 - -
Seca8g07275 648 ProSiteProfiles Myb-like domain profile. 56 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07275 Seca-Chr8 169190141 169192955 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07275 50 588 Trihelix Transcription Factor Family AT1G76880 52.763 3.48e-164 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca8g07275 Myb_DNA-bind_4 9.2e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07275 - - pvu:PHAVU_007G079700g 719.153