Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07274 ATGCAGCAGCTTGCAGACTCAGCAGTGGTGTTGGAGACCTCCTCCTCCGGGGAGGCCTTACCGGCGGCGCATGACGGTTCCAACGGCGGGGATGTGATTGCGATGGATGAAGATCATAAAGGAAACATGAGAGAGGGTTGTGGAGAAGAAGGTGATGATAAGATGATCAACGGTGGTGGAGGAGGAGGAGGAAACCGGTGGCCCCGGCAAGAAACCTTAGCTCTGTTGAAGATAAGGTCTGATATGGATGCTGTGTTTCGAGATTCAAGCCTTAAGGGTCCACTCTGGGAACAAGTTTCAAGGAAACTAGGGGAACTGGGTTATCAACGAAACGCAAAGAAGTGTAAGGAGAAGTTTGAGAATGTGTACAAGTATCACAAGAGAACCAAAGAGAGTAGAAGTGGGAAATCAGATGGGAAAACCTATAGGTTCTTTGATCAATTACAAGCCCTTGAGAATCATCACCAATTCACAGTCTCTTTCTCGCCAAAACCACAACCAACAACAAACACAGCAAAGCCTAGTGATACTACACCAATCTCTTATGTCACCACAAACCCTACTCCAATCATTTCTCCTTCTCCACCCACCAATGCTGCTATTACCACCACCATCACCTCTCCAACAGTAACAACCAACCCTAAAAACCCAACACCACAAGGCAACAACAACAACAACAGCAACATTAATGCAGTTCCATATTCCTTGCCTAACATGAACAACCTCTTCTCAACCACCACCACAACAACTACATCCACCTCTTCTTCCACCGCTTCTGATGAAGACTTGGAAGAGAAGTACAGAAAAAAGAGAAAATGGAAGGAGTATTTCAGGAGGCTAACAAGGCAGGTGTTAGCAAAACAAGAGGAAATGCAAAAGAGGTTCTTAGAAGCCATAGACAAACGTGAAAGAGAACACATGGCACAACAAGACGCTTGGAGGATGCAAGAAATGGCAAGAATCAATAGAGAACATGAACTTCTTGTCCAAGAACGTTCAACAGCAGCAGCAAAAAATGCAGCAGTTATTGCTTTCTTGCAAAAACTCTCAGGCCAGCAACAAAATCCCACAACAACAACACCTCCCAATATCATCCAACCACCACAACAGCAACAAGTTCAGCAGCAGATGATTATTCCACAACCGCCAATGGTAGTATTACCAAACAACAACAATGAAATTCAGAAAATGAATAATGGTCATCATCATCACAGTAATGCTGCTACTTCTCCTTCTTTCAACTCTTCAAGATGGCCAAAGGCTGAAGTTCATGCTTTGATAAGGCTTAGGACGAGTCTAGAACCTAAGTATCAAGAGAATGGACCCAAAGCTCCATTGTGGGAAGATATATCAGCTGGGATGCAGAGGCTTGGATATAACAGGAGTTCCAAAAGGTGTAAAGAAAAATGGGAGAACATTAACAAGTACTTCAAGAAAGTCAAGGAGAGTAACAAGCAAAGGCGTGAGGATAGTAAGACTTGTCCTTATTTCCATGAGCTTGAGGCTTTATACAAAGAAAAGGGAAAAACCGTACAGAACCCTTTTATGAGACCGAATGAGATGATGGAGCCATTGATGGTGCAACCAGAACAGCAATGGAGGCCTCCTCCTCATCCATATGAACAATCAGAAGAGGAGAAGAAGAAGAAGAAGAATGAATTGAAAGAAAGAGAGGGAGATAGCATGGAAGAAGATTATGATGATGAAGATGAAGATGAAGAAGGAGATAGCAATATGGAGGAAGGAGAAGGAGAAGGAGGGAACGGTTATGAGATTGTGACAAATAAACTTTCTTCAGTGGACACAGTTGAATGA 1815 0.4336 MQQLADSAVVLETSSSGEALPAAHDGSNGGDVIAMDEDHKGNMREGCGEEGDDKMINGGGGGGGNRWPRQETLALLKIRSDMDAVFRDSSLKGPLWEQVSRKLGELGYQRNAKKCKEKFENVYKYHKRTKESRSGKSDGKTYRFFDQLQALENHHQFTVSFSPKPQPTTNTAKPSDTTPISYVTTNPTPIISPSPPTNAAITTTITSPTVTTNPKNPTPQGNNNNNSNINAVPYSLPNMNNLFSTTTTTTTSTSSSTASDEDLEEKYRKKRKWKEYFRRLTRQVLAKQEEMQKRFLEAIDKREREHMAQQDAWRMQEMARINREHELLVQERSTAAAKNAAVIAFLQKLSGQQQNPTTTTPPNIIQPPQQQQVQQQMIIPQPPMVVLPNNNNEIQKMNNGHHHHSNAATSPSFNSSRWPKAEVHALIRLRTSLEPKYQENGPKAPLWEDISAGMQRLGYNRSSKRCKEKWENINKYFKKVKESNKQRREDSKTCPYFHELEALYKEKGKTVQNPFMRPNEMMEPLMVQPEQQWRPPPHPYEQSEEEKKKKKNELKEREGDSMEEDYDDEDEDEEGDSNMEEGEGEGGNGYEIVTNKLSSVDTVE. 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07274 604 MobiDBLite consensus disorder prediction 206 264 - -
Seca8g07274 604 FunFam Trihelix transcription factor GT-2 67 128 - -
Seca8g07274 604 MobiDBLite consensus disorder prediction 159 181 - -
Seca8g07274 604 Coils Coil 540 560 - -
Seca8g07274 604 MobiDBLite consensus disorder prediction 560 581 - -
Seca8g07274 604 FunFam Trihelix transcription factor GT-2 418 479 - -
Seca8g07274 604 CDD GT1 65 130 - -
Seca8g07274 604 CDD GT1 416 481 - -
Seca8g07274 604 ProSiteProfiles Myb-like domain profile. 410 474 IPR001005 -
Seca8g07274 604 MobiDBLite consensus disorder prediction 526 604 - -
Seca8g07274 604 ProSiteProfiles Myb-like domain profile. 65 123 IPR001005 -
Seca8g07274 604 PANTHER FI21293P1 28 551 - -
Seca8g07274 604 Gene3D - 418 479 - -
Seca8g07274 604 Gene3D - 67 128 - -
Seca8g07274 604 MobiDBLite consensus disorder prediction 206 258 - -
Seca8g07274 604 MobiDBLite consensus disorder prediction 539 559 - -
Seca8g07274 604 Pfam Myb/SANT-like DNA-binding domain 416 503 IPR044822 -
Seca8g07274 604 Pfam Myb/SANT-like DNA-binding domain 65 151 IPR044822 -
Seca8g07274 604 SMART sant 414 476 IPR001005 -
Seca8g07274 604 SMART sant 63 125 IPR001005 -
Seca8g07274 604 MobiDBLite consensus disorder prediction 1 30 - -
Seca8g07274 604 MobiDBLite consensus disorder prediction 396 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07274 Seca-Chr8 169166952 169169552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07274 59 532 Trihelix Transcription Factor Family AT1G76890 50.403 4.58e-150 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca8g07274 Myb_DNA-bind_4 1.9e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07274 - - gmx:100799041 671.774