LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g07253	ATGTGCTTGCTAACGGTGGCGCATCAAAGGGATTCAGGGAAGTTCATCAAGTTCACGACGGAGCACGGTGGTGATGAGGAAGTGGAAGAAGAAGAAGAAGACAGTTTAAGGAAAGATGATGGAAGTTCAAGATTGGCATCACAGTTCAGTTTCAGCCAAGAAAGGGAGGTGGCAATGCCAGGTTCTGTGGTTTCGGTGCCGACCCAGATGGTGTTATCTTCTGGTCAGAGTCAGACAAACACAGAGTGGGTCCAAAGAAGTGGTTTTCCTTTTATGTCAGGTTTTGTCCATGTCCCTTCTTCTTCTCCTCCTTTGTATTCTTCCACTTCTGGCCCTCTTTTGGGGTGTTCCTCTGCTTCTGGTTCCTGGGTTGGGCACAAGAGAGCGCGTGAAGAAGGAGCTTCTTCTCAATTGTTACAAGATGTGACCACACAACACAGAAACATTGGTGGTGATTTTAGAGTACCTACTCAGGGACACTCATCATCAGTGACAGAACCAGCAGCTACAACTACAAGCACTGCAACACAGTCAAGTGAAGCAGCAGCATCAAGTGAAGAAACCGGTGAGAGGAGAAGGAGATACAGAGGAGTGAGGCAGAGACCTTGGGGAAAATGGGCAGCAGAAATTCGTGATCCTCACAAAGCTGCAAGAGTGTGGCTTGGAACATTTGACACTGCAGAAGCTGCAGCAAGAGCTTATGATGAAGCTGCATTGAGATTCAGAGGAAACAGAGCAAAACTCAACTTCCCTGAAAATGTTGCAGCAATGAGACCACCTTTTCAAGATTTTCCGGCGAATAGGCCTGCTGTACCTGCTTCTTCGGCAACCCTTTATTCTCCGGCGCCGCCGCAGCTTCAGCAGCAGCAGCAACCGTTCACACCTTTTCAAGGCCCTTCTGATTTGATGAGAGACTATTGGGAATATTCTCAGCTTCTGAAAGGCTCAGGGGATTTCCATGGACTTGAGCAATGGTTCTATGAATCTCAAATGGCAGCAATCCATTCTTCTTCTTCTTCTTCTTCGTTGTTATCACAATCTCCATCGCTTTCTTTGTCATCTTCTTCGTCACCAACTGCATTTTCACCTTCCAGTCAATTGTCCCCTGCTTCATTTCCCCTGTTTTCTGGTCAGCAAATGGGGTTTTTCCGGCTACCGGGAGACCACTCTCGCGGCGGCGACGGCGGTGGTGACGGGTCAGATTTTCCACCTTCAACATGGTCAGATACCAGTGGCTATCCTCCTCCTCCTTCTGGTTGA	1260	0.4825	MCLLTVAHQRDSGKFIKFTTEHGGDEEVEEEEEDSLRKDDGSSRLASQFSFSQEREVAMPGSVVSVPTQMVLSSGQSQTNTEWVQRSGFPFMSGFVHVPSSSPPLYSSTSGPLLGCSSASGSWVGHKRAREEGASSQLLQDVTTQHRNIGGDFRVPTQGHSSSVTEPAATTTSTATQSSEAAASSEETGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVAAMRPPFQDFPANRPAVPASSATLYSPAPPQLQQQQQPFTPFQGPSDLMRDYWEYSQLLKGSGDFHGLEQWFYESQMAAIHSSSSSSSLLSQSPSLSLSSSSSPTAFSPSSQLSPASFPLFSGQQMGFFRLPGDHSRGGDGGGDGSDFPPSTWSDTSGYPPPPSG.	420

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g07253	419	MobiDBLite	consensus disorder prediction	383	419	-	-
	Seca8g07253	419	MobiDBLite	consensus disorder prediction	153	196	-	-
	Seca8g07253	419	PRINTS	Ethylene responsive element binding protein signature	217	233	IPR001471	GO:0003700\|GO:0006355
	Seca8g07253	419	PRINTS	Ethylene responsive element binding protein signature	195	206	IPR001471	GO:0003700\|GO:0006355
	Seca8g07253	419	MobiDBLite	consensus disorder prediction	272	297	-	-
	Seca8g07253	419	MobiDBLite	consensus disorder prediction	278	297	-	-
	Seca8g07253	419	Pfam	AP2 domain	194	243	IPR001471	GO:0003700\|GO:0006355
	Seca8g07253	419	FunFam	Ethylene-responsive transcription factor 2	193	252	-	-
	Seca8g07253	419	ProSiteProfiles	AP2/ERF domain profile.	194	251	IPR001471	GO:0003700\|GO:0006355
	Seca8g07253	419	MobiDBLite	consensus disorder prediction	153	184	-	-
	Seca8g07253	419	PANTHER	DNA-BINDING DOMAIN	160	340	IPR044808	GO:0003700\|GO:0009873
	Seca8g07253	419	Gene3D	AP2/ERF domain	193	253	IPR036955	GO:0003700\|GO:0006355
	Seca8g07253	419	CDD	AP2	202	253	IPR001471	GO:0003700\|GO:0006355
	Seca8g07253	419	SUPERFAMILY	DNA-binding domain	194	252	IPR016177	GO:0003677
	Seca8g07253	419	MobiDBLite	consensus disorder prediction	17	44	-	-
	Seca8g07253	419	MobiDBLite	consensus disorder prediction	345	368	-	-
	Seca8g07253	419	SMART	rav1_2	194	257	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g07253	Seca-Chr8	168916525	168919955	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g07253	149	254	AP2-EREBP Transcription Factor Family	AT5G61890	55.140	2.38e-33	124

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Seca8g07253		AP2	8.3e-15	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g07253	-		-	lja:Lj5g3v1937400.1	416.387