Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07253 ATGTGCTTGCTAACGGTGGCGCATCAAAGGGATTCAGGGAAGTTCATCAAGTTCACGACGGAGCACGGTGGTGATGAGGAAGTGGAAGAAGAAGAAGAAGACAGTTTAAGGAAAGATGATGGAAGTTCAAGATTGGCATCACAGTTCAGTTTCAGCCAAGAAAGGGAGGTGGCAATGCCAGGTTCTGTGGTTTCGGTGCCGACCCAGATGGTGTTATCTTCTGGTCAGAGTCAGACAAACACAGAGTGGGTCCAAAGAAGTGGTTTTCCTTTTATGTCAGGTTTTGTCCATGTCCCTTCTTCTTCTCCTCCTTTGTATTCTTCCACTTCTGGCCCTCTTTTGGGGTGTTCCTCTGCTTCTGGTTCCTGGGTTGGGCACAAGAGAGCGCGTGAAGAAGGAGCTTCTTCTCAATTGTTACAAGATGTGACCACACAACACAGAAACATTGGTGGTGATTTTAGAGTACCTACTCAGGGACACTCATCATCAGTGACAGAACCAGCAGCTACAACTACAAGCACTGCAACACAGTCAAGTGAAGCAGCAGCATCAAGTGAAGAAACCGGTGAGAGGAGAAGGAGATACAGAGGAGTGAGGCAGAGACCTTGGGGAAAATGGGCAGCAGAAATTCGTGATCCTCACAAAGCTGCAAGAGTGTGGCTTGGAACATTTGACACTGCAGAAGCTGCAGCAAGAGCTTATGATGAAGCTGCATTGAGATTCAGAGGAAACAGAGCAAAACTCAACTTCCCTGAAAATGTTGCAGCAATGAGACCACCTTTTCAAGATTTTCCGGCGAATAGGCCTGCTGTACCTGCTTCTTCGGCAACCCTTTATTCTCCGGCGCCGCCGCAGCTTCAGCAGCAGCAGCAACCGTTCACACCTTTTCAAGGCCCTTCTGATTTGATGAGAGACTATTGGGAATATTCTCAGCTTCTGAAAGGCTCAGGGGATTTCCATGGACTTGAGCAATGGTTCTATGAATCTCAAATGGCAGCAATCCATTCTTCTTCTTCTTCTTCTTCGTTGTTATCACAATCTCCATCGCTTTCTTTGTCATCTTCTTCGTCACCAACTGCATTTTCACCTTCCAGTCAATTGTCCCCTGCTTCATTTCCCCTGTTTTCTGGTCAGCAAATGGGGTTTTTCCGGCTACCGGGAGACCACTCTCGCGGCGGCGACGGCGGTGGTGACGGGTCAGATTTTCCACCTTCAACATGGTCAGATACCAGTGGCTATCCTCCTCCTCCTTCTGGTTGA 1260 0.4825 MCLLTVAHQRDSGKFIKFTTEHGGDEEVEEEEEDSLRKDDGSSRLASQFSFSQEREVAMPGSVVSVPTQMVLSSGQSQTNTEWVQRSGFPFMSGFVHVPSSSPPLYSSTSGPLLGCSSASGSWVGHKRAREEGASSQLLQDVTTQHRNIGGDFRVPTQGHSSSVTEPAATTTSTATQSSEAAASSEETGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVAAMRPPFQDFPANRPAVPASSATLYSPAPPQLQQQQQPFTPFQGPSDLMRDYWEYSQLLKGSGDFHGLEQWFYESQMAAIHSSSSSSSLLSQSPSLSLSSSSSPTAFSPSSQLSPASFPLFSGQQMGFFRLPGDHSRGGDGGGDGSDFPPSTWSDTSGYPPPPSG. 420
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07253 419 MobiDBLite consensus disorder prediction 383 419 - -
Seca8g07253 419 MobiDBLite consensus disorder prediction 153 196 - -
Seca8g07253 419 PRINTS Ethylene responsive element binding protein signature 217 233 IPR001471 GO:0003700|GO:0006355
Seca8g07253 419 PRINTS Ethylene responsive element binding protein signature 195 206 IPR001471 GO:0003700|GO:0006355
Seca8g07253 419 MobiDBLite consensus disorder prediction 272 297 - -
Seca8g07253 419 MobiDBLite consensus disorder prediction 278 297 - -
Seca8g07253 419 Pfam AP2 domain 194 243 IPR001471 GO:0003700|GO:0006355
Seca8g07253 419 FunFam Ethylene-responsive transcription factor 2 193 252 - -
Seca8g07253 419 ProSiteProfiles AP2/ERF domain profile. 194 251 IPR001471 GO:0003700|GO:0006355
Seca8g07253 419 MobiDBLite consensus disorder prediction 153 184 - -
Seca8g07253 419 PANTHER DNA-BINDING DOMAIN 160 340 IPR044808 GO:0003700|GO:0009873
Seca8g07253 419 Gene3D AP2/ERF domain 193 253 IPR036955 GO:0003700|GO:0006355
Seca8g07253 419 CDD AP2 202 253 IPR001471 GO:0003700|GO:0006355
Seca8g07253 419 SUPERFAMILY DNA-binding domain 194 252 IPR016177 GO:0003677
Seca8g07253 419 MobiDBLite consensus disorder prediction 17 44 - -
Seca8g07253 419 MobiDBLite consensus disorder prediction 345 368 - -
Seca8g07253 419 SMART rav1_2 194 257 IPR001471 GO:0003700|GO:0006355
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca8g07253 Seca-Chr8 168916525 168919955 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07253 149 254 AP2-EREBP Transcription Factor Family AT5G61890 55.140 2.38e-33 124
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g07253 AP2 8.3e-15 CL0081
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07253 - - lja:Lj5g3v1937400.1 416.387