Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07250 ATGGATCCTCCTGCTGAAGATTCGCCTCAATACATACATATAAATCAGAACGATTTTTTTATGCGAAGGCATAAGAAGCAGAAGGAGGAAGATATTGCTATATGTGAATGCAGGTATAATGCTGATGACCCTGATAGTGCATGTGGGGATGGGTGCCTGAATGTATTAACCAGCACTGAATGCACCCCTGGTTATTGTCCTTGTGGTATCTTTTGCAAAAATCAGAAATTTCAGAAGTGTGAATATGCAAAAACGAAGTTATTTAAAACTGAAGGCCGTGGGTGGGGTCTTTTAGCTGATGAGGATATTAAGGCTGGACAATTTGTCATTGAATACTGTGGAGAAGTAATATCATGGAAAGAAGCCAAACGTAGATCCCAGGCTTATGAGATTCAAGGTCTTAAGGATGCATTTATCATTTCCCTTAATGCATCAGAATCTATTGATGCAACCAGAAAAGGAAGCCTTGCCAGATTTATAAATCATTCCTGTCAACCAAACTGTGAGACAAGGAAATGGAATGTCTTGGGGGAAATAAGAGTTGGAATATTTGCAAAGCATGATATTCCTATTGGAACTGAATTGGCATATGACTATAATTTTGAATGGTATGGAGGTGCAAAGGTTCGCTGCCTTTGTGGTGCACTCAAATGTTCTGGATTCCTTGGAGCAAAATCTCGTGGTTTTCAGGAGGATACTTATCTATGGGAAGACGATGATGACAGGTACTCTGTTGAGAAAATTCCTGTATATGACTCTGCAGAAGATGAACTGGTGTTAAATGTTAATGGACAAACCGAACATTCCATGGATGTTATGCTGCTTAAAGCCGAGCAACTGTCGGAGTCCACTACTTTTAATGTTCAGCAAGTTGATTCAGTTCAGATGAAGGGTTTAGATGTCAAGAAGATTAGAACTGAAATAGTAGGTGAGGATATGAAGCTGTACTCCCAAGATACGGAACAGTCCCTTTCACAAAAGAATGCAATGATATCACGTATCCAAAGTAATGATGCAGGCAGAAACTATCGCATTGGATGTAGGTCCATGTCTACCAAAAGATCAAGGGCATATAATGGTGGAAGGTTTAAAAATCTCATACAGAAGAAAATTGATGCAAAGTTTGCCGCTGGCCTCTTAGCATCAAAGGAAGCACAAGAGGAGATTTTAGATTATGAGGTATGA 1185 0.3958 MDPPAEDSPQYIHINQNDFFMRRHKKQKEEDIAICECRYNADDPDSACGDGCLNVLTSTECTPGYCPCGIFCKNQKFQKCEYAKTKLFKTEGRGWGLLADEDIKAGQFVIEYCGEVISWKEAKRRSQAYEIQGLKDAFIISLNASESIDATRKGSLARFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPIGTELAYDYNFEWYGGAKVRCLCGALKCSGFLGAKSRGFQEDTYLWEDDDDRYSVEKIPVYDSAEDELVLNVNGQTEHSMDVMLLKAEQLSESTTFNVQQVDSVQMKGLDVKKIRTEIVGEDMKLYSQDTEQSLSQKNAMISRIQSNDAGRNYRIGCRSMSTKRSRAYNGGRFKNLIQKKIDAKFAAGLLASKEAQEEILDYEV. 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07250 394 FunFam Histone-lysine N-methyltransferase 1 235 - -
Seca8g07250 394 PANTHER SET DOMAIN PROTEINS 8 336 - -
Seca8g07250 394 ProSiteProfiles AWS domain profile. 30 81 IPR006560 GO:0005634|GO:0042054
Seca8g07250 394 Pfam SET domain 94 200 IPR001214 GO:0005515
Seca8g07250 394 Pfam AWS domain 42 80 IPR006560 GO:0005634|GO:0042054
Seca8g07250 394 SUPERFAMILY SET domain 9 220 IPR046341 -
Seca8g07250 394 ProSiteProfiles Post-SET domain profile. 207 223 IPR003616 -
Seca8g07250 394 ProSiteProfiles SET domain profile. 83 200 IPR001214 GO:0005515
Seca8g07250 394 SMART set_7 83 206 IPR001214 GO:0005515
Seca8g07250 394 SMART shorttest3 30 82 IPR006560 GO:0005634|GO:0042054
Seca8g07250 394 Gene3D SET domain 2 235 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07250 Seca-Chr8 168865165 168878838 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07250 65 222 C2H2 Transcription Factor Family AT2G23740 34.807 2.57e-21 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca8g07250 SET 2.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07250 - - gmx:100804657 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07250 8 168865165 168878838 Seca8g07250 8 168865165 168878838 ECH