LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g07246	ATGCATCAATTGCTTTCAGGTCTGCAGCATTGCCATGATAGGGGAATTTTGCATCGAGATATAAAGGGGTCAAACCTTTTGATTGATAAAAATGGGATGCTTAAGATCGCAGATTTTGGACTTGCCAATTATTATAATCCAAACCATGAACCGCCTCTCACAAACCGGGTTGTGACACTATGGTACAGAGCTCCTGAGTTGTTGTTAGGTTCCACAAGTTATGGAGTTGGTATTGATCTATGGAGTGCTGGATGTCTCCTGGCAGAAATGTTTAGAGGATTTCCAATCATGCCTGGAAAAACAGAGGTTGAGCAACTTCATAGAATTTTCAGGCTATGTGGCACACCATCAGAGGAGTATTGGAGAAAATTAAAACTGTCTACAACTTTTAGACCTCCAAAGTCTTATAGACCCAGCCTTGTAGAAACTTTCCGGGATCTCCCTCCATCTTCTTTAGGTCTTTTATGTACTCTTCTTGCTTTGGATCCTGCATTCCGGGGCAGTGCATCTAAAGCTCTCAACAATCAGTTTTTCTTTTCAAGCCCATTGGCATGTGATCTCTCTGGTCTGCCTGTAATTGACAAAGATGATGATGAGCATATTCAAGCCAATGAACAGATCAAGTACATGAACTCTAAAATCAGGCGTTCTCGTACATATCTGGAGCGTCGCAAGAATTTAGCATCTAATCGGCCATTAGAACATACTGTATCATCTAAAGAGGAATTGAGAAGGAATCCTGAGCCTGAAACATCTGTTCCAAATGAAGAAGTGGATAGCACAACAAGTAGTACCTCATCTAGTATAAACCCAGCTGGGGCTATGGACCACTCACCTTTGTTTTTCTCTCCATTTCTGGCTTCAGATCAAAAGCTGCATCCCAAAATCCATCGCCATGCTAATGTTGGTGAAAAAATCATCAAGAACCTTCCTCCATTATCCAAGTCAAAACCAAAAGCAACCAAGAAAGATGACAGCAGATACAGACCAGACCAGGGTTTCAGGTCTTCTTCCACCAGAGAATTTAGAAACTTAAAACGAGAGGAACATTTACTCTTTGAAATTGATGATTAG	1074	0.4115	MHQLLSGLQHCHDRGILHRDIKGSNLLIDKNGMLKIADFGLANYYNPNHEPPLTNRVVTLWYRAPELLLGSTSYGVGIDLWSAGCLLAEMFRGFPIMPGKTEVEQLHRIFRLCGTPSEEYWRKLKLSTTFRPPKSYRPSLVETFRDLPPSSLGLLCTLLALDPAFRGSASKALNNQFFFSSPLACDLSGLPVIDKDDDEHIQANEQIKYMNSKIRRSRTYLERRKNLASNRPLEHTVSSKEELRRNPEPETSVPNEEVDSTTSSTSSSINPAGAMDHSPLFFSPFLASDQKLHPKIHRHANVGEKIIKNLPPLSKSKPKATKKDDSRYRPDQGFRSSSTREFRNLKREEHLLFEIDD.	358

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca8g07246	357	Gene3D	Transferase(Phosphotransferase) domain 1	1	216	-	-
Seca8g07246	357	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	16	28	IPR008271	GO:0004672\|GO:0006468
Seca8g07246	357	ProSiteProfiles	Protein kinase domain profile.	1	178	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Seca8g07246	357	MobiDBLite	consensus disorder prediction	225	252	-	-
Seca8g07246	357	MobiDBLite	consensus disorder prediction	225	272	-	-
Seca8g07246	357	SUPERFAMILY	Protein kinase-like (PK-like)	1	183	IPR011009	-
Seca8g07246	357	PANTHER	CELL DIVISION PROTEIN KINASE	1	182	-	-
Seca8g07246	357	FunFam	Putative serine/threonine-protein kinase	1	216	-	-
Seca8g07246	357	MobiDBLite	consensus disorder prediction	317	341	-	-
Seca8g07246	357	Pfam	Protein kinase domain	1	178	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g07246	Seca-Chr8	168831783	168838418	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g07246	1	216	Core Cell Cycle Gene Families	AT5G10270	47.489	6.55e-64	209

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Seca8g07246		Pkinase	2.8e-40	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g07246	K08819		-	gmx:100776854	567.77

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