Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07246 ATGCATCAATTGCTTTCAGGTCTGCAGCATTGCCATGATAGGGGAATTTTGCATCGAGATATAAAGGGGTCAAACCTTTTGATTGATAAAAATGGGATGCTTAAGATCGCAGATTTTGGACTTGCCAATTATTATAATCCAAACCATGAACCGCCTCTCACAAACCGGGTTGTGACACTATGGTACAGAGCTCCTGAGTTGTTGTTAGGTTCCACAAGTTATGGAGTTGGTATTGATCTATGGAGTGCTGGATGTCTCCTGGCAGAAATGTTTAGAGGATTTCCAATCATGCCTGGAAAAACAGAGGTTGAGCAACTTCATAGAATTTTCAGGCTATGTGGCACACCATCAGAGGAGTATTGGAGAAAATTAAAACTGTCTACAACTTTTAGACCTCCAAAGTCTTATAGACCCAGCCTTGTAGAAACTTTCCGGGATCTCCCTCCATCTTCTTTAGGTCTTTTATGTACTCTTCTTGCTTTGGATCCTGCATTCCGGGGCAGTGCATCTAAAGCTCTCAACAATCAGTTTTTCTTTTCAAGCCCATTGGCATGTGATCTCTCTGGTCTGCCTGTAATTGACAAAGATGATGATGAGCATATTCAAGCCAATGAACAGATCAAGTACATGAACTCTAAAATCAGGCGTTCTCGTACATATCTGGAGCGTCGCAAGAATTTAGCATCTAATCGGCCATTAGAACATACTGTATCATCTAAAGAGGAATTGAGAAGGAATCCTGAGCCTGAAACATCTGTTCCAAATGAAGAAGTGGATAGCACAACAAGTAGTACCTCATCTAGTATAAACCCAGCTGGGGCTATGGACCACTCACCTTTGTTTTTCTCTCCATTTCTGGCTTCAGATCAAAAGCTGCATCCCAAAATCCATCGCCATGCTAATGTTGGTGAAAAAATCATCAAGAACCTTCCTCCATTATCCAAGTCAAAACCAAAAGCAACCAAGAAAGATGACAGCAGATACAGACCAGACCAGGGTTTCAGGTCTTCTTCCACCAGAGAATTTAGAAACTTAAAACGAGAGGAACATTTACTCTTTGAAATTGATGATTAG 1074 0.4115 MHQLLSGLQHCHDRGILHRDIKGSNLLIDKNGMLKIADFGLANYYNPNHEPPLTNRVVTLWYRAPELLLGSTSYGVGIDLWSAGCLLAEMFRGFPIMPGKTEVEQLHRIFRLCGTPSEEYWRKLKLSTTFRPPKSYRPSLVETFRDLPPSSLGLLCTLLALDPAFRGSASKALNNQFFFSSPLACDLSGLPVIDKDDDEHIQANEQIKYMNSKIRRSRTYLERRKNLASNRPLEHTVSSKEELRRNPEPETSVPNEEVDSTTSSTSSSINPAGAMDHSPLFFSPFLASDQKLHPKIHRHANVGEKIIKNLPPLSKSKPKATKKDDSRYRPDQGFRSSSTREFRNLKREEHLLFEIDD. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07246 357 Gene3D Transferase(Phosphotransferase) domain 1 1 216 - -
Seca8g07246 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 16 28 IPR008271 GO:0004672|GO:0006468
Seca8g07246 357 ProSiteProfiles Protein kinase domain profile. 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07246 357 MobiDBLite consensus disorder prediction 225 252 - -
Seca8g07246 357 MobiDBLite consensus disorder prediction 225 272 - -
Seca8g07246 357 SUPERFAMILY Protein kinase-like (PK-like) 1 183 IPR011009 -
Seca8g07246 357 PANTHER CELL DIVISION PROTEIN KINASE 1 182 - -
Seca8g07246 357 FunFam Putative serine/threonine-protein kinase 1 216 - -
Seca8g07246 357 MobiDBLite consensus disorder prediction 317 341 - -
Seca8g07246 357 Pfam Protein kinase domain 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07246 357 SMART serkin_6 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07246 357 MobiDBLite consensus disorder prediction 303 341 - -
Seca8g07246 357 MobiDBLite consensus disorder prediction 253 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07246 Seca-Chr8 168831783 168838418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07246 1 216 Core Cell Cycle Gene Families AT5G10270 47.489 6.55e-64 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Seca8g07246 Pkinase 2.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07246 K08819 - gmx:100776854 567.77