Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07227 ATGGAAAATATTGTCCCCCATAGTGTTACTACTGTGTTATTTTCCTTACTCTTCTTTTGCCTCACCTTGACTAAGATAGAAGTCACTTGTCTCTCACCTGATGGACAAGCCCTTCTTTCTCTTCTGTCTGCAGCTGGTCCTGCTGCAAAATCATCACCTTCTGTGCTCTCCTCATGGAATCCATCAAGCTCAACACCATGTTCATGGAAAGGCATTACTTGCTCCCCACAAGGTAGAGTCATTTCCCTCTCTATTCCAGATACTTTTCTCAACCTTTCCTCTTTACCTCCAGAGCTCTCCTCTTTATCAATGCTGCAACTTCTCAATCTCTCTTCCACTAATGTCTCTGGCTCCATCCCACCCTCTTTTGGTCAACTCTCTCATCTTCAACTCCTTGACCTCTCCTCAAACTCTCTCACTGGTTCCATTCCTGCTGAACTTGGAAGGCTTTCTTCCCTTCAGTTTCTTTTCTTGAACTCTAACAGATTGACAGGAAGCATTCCTCAACATCTTTCCAACCTTACTTCACTTGAAGTTCTCTGCCTCCAAGACAATCTTCTTAATGGGTCAATCCCATCACAGTTAGGCTCTTTGATATCTCTGCAGCAGTTTAGGATTGGGGGTAACCCATATCTCACTGGACAAATCCCTTCACAGTTAGGCCTACTCACCAACCTCACAACATTTGGTGCAGCTGCCACTGGACTTTCTGGTGCCATTCCCTCTTCATTTGGGAACTTGATCAATCTCCAAACATTAGCACTTTATGATACTGAAGTTTCTGGCTCATTACCACCAGAACTTGGGTTGTGTTCTGAGTTGAGAAATATTTATTTGCACATGAATAAGCTCACTGGCTCTATCCCTCCTCAATTAGGTAAGTTGCAAAAACTTACAAGCTTGCTTCTTTGGGGAAATGCATTATCTGGGCCAATACCAGCTGAGCTTTCCAACTGTTCATCACTTGTGATATTTGATGTCTCTTCTAATGACCTCTCTGGTGAAATACCTGGGGACTTTGGGAAGCTAGTGGTTCTGCAACAGCTTCATCTATCAGACAACTCACTCACAGGTAAAATACCATGGCAGCTGAGCAACTGCACGAGCCTTGCCACTGTTCAGCTTGACAAGAATCAATTATCAGGTACAATTCCATGGCAGATTGGAAAATTGAAACTTTTGCAGAGTTTTTTCTTGTGGGGTAATTTAGTATCTGGAACCATACCATCATCTTTTGGAAACTGCACAGAACTTTATGCACTTGACCTTTCAAGGAACAAGCTTACAGGTTCTATCCCAGATGAAATTTTCAACTTGAAGAAGCTGAGTAAGCTTCTGCTTCTGGGGAATTCATTAACAGGAAGGTTGCCACCAAGTGTTGCAAACTGTCAGTCTTTAGTGAGGTTGAGGGTTGGAGAGAACCAGCTTTCAGGACAGATTCCTAAAGAGATAGGCCAATTGCAGAATCTGGTGTTTCTTGACTTGTACATGAATCATTTCTCTGGAAGCTTACCAGTGGAGATTGCCAACATCACAGTTCTTGAGCTTTTAGATGTGCATAACAACTACCTCACTGGGGAAATTCCATCTGTGATTGGGGAACTTGAAAATTTGGAGCAGCTTGATCTCAGCAGAAACAGTTTGACAGGTGAAATTCCTTGGAGTTTTGGAAACTTCAGTTATTTGAACAAGCTCATCCTCAACAATAATTTGCTGACAGGATCAATCCCAAAATCCATTAAAAATTTGCAGAAGCTAACTCTATTAGATTTGAGTTATAACAGCCTCTCTGGTGGCATACCCTCTGAGATTGGTCATATTACAAGCTTAACCATTAGTTTGGACTTAAGCTCAAATGCATTCACAGGAGAAATCCCAGAATCATTGTCTGCTTTGACACAGTTACAATCACTAGATCTTTCTCATAATTTGCTTTATGGAGGAATTAAGGTTCTTGGTTCTCTTACTAGTCTCACTTCACTCAATATCTCCTACAACAATTTCTCAGGTCCTATCCCTATAACTCCATTCTTCAGAACTCTATCTTCAAATTCATATCTTCAGAACTCCCATCTATGTCAGTCCATTGATGGAACTACATGTTCTTCAAGTCTGATCCGAAAAAATGGTTTAAAATCTGCAAAAACCATAGCTTTGGTCATGGTAATTCTAGCCTCAGTTACCATAATTGTCATTGCATCATGGATTCTAAAGGTTGAGAAGACTTTGGGGGCATTAGCTTCCACATCAGGAGTTGAGGATTTCTCTTATCCTTGGACTTTCATCCCTTTTCAAAAACTGAACTTCAGCATAGATAACATCTTGGATTGCTTGAAGGATGAAAATGTGATTGGAAAGGGTTGTTCTGGTGTTGTGTACAAGGCTGAGATGCCAAATGGGGAGTTGATAGCAGTGAAGAAGCTTTGGAAAGCAAACAAAGCAGATGAAAGAGAAACTATGGATTCTTTTGCTGCAGAGATCCAGATTCTGGGGTACATTCGGCATAGGAACATTGTGAGGCTCTTAGGTTATTGTTCTAACAGGAGTGTTAAGCTTCTGCTCTATAACTACATCTCAAATGGTAATCTACGACAACTTTTGCAAGAGAACAGGAATTTAGACTGGGAAACTAGATACAAGATTGCTGTTGGGTCAGCTCAAGGTCTAGCTTACCTTCATCATGATTGTGTCCCTGCAATTCTTCATAGAGATGTTAAGTGCAATAACATACTCCTAGATTCCAAATATGAGGCATATCTAGCAGATTTTGGTCTTGCAAAGCTCATGCATTCACCAAATTATCATCAAGCAATGTCCAGAGTTGCTGGTTCCTATGGTTATATTGCCCCAGAATATGGCTACTCCATGAACATAACAGAGAAAAGTGATGTCTACAGCTATGGAGTGGTTTTGTTAGAGATATTAAGTGGGCGTAGTGCTGTTGAATCCCATGTTGGAGATGGACAACACATAGTTGAGTGGGTGAAGAGAAAGATGGGAAGTTTTGAACCAGCAGTATCAATACTAGATGCAAAGCTACAAGGTCTACCAGATCAAATGGTGCAAGAGATGCTTCAAACACTTGGAATTGCTATGTTTTGTGTGAACTCTTCCCCAGCAGAGCGCCCCACTATGAAGGAAGTGGTAGCACTACTAATGGAGGTGAAGAGCCAGCCTGAGGAAGTGGGGAAGACCTCTCAACCTCTAATAAAGCAGTCCTCAACTCAAAGCTGA 3234 0.415 MENIVPHSVTTVLFSLLFFCLTLTKIEVTCLSPDGQALLSLLSAAGPAAKSSPSVLSSWNPSSSTPCSWKGITCSPQGRVISLSIPDTFLNLSSLPPELSSLSMLQLLNLSSTNVSGSIPPSFGQLSHLQLLDLSSNSLTGSIPAELGRLSSLQFLFLNSNRLTGSIPQHLSNLTSLEVLCLQDNLLNGSIPSQLGSLISLQQFRIGGNPYLTGQIPSQLGLLTNLTTFGAAATGLSGAIPSSFGNLINLQTLALYDTEVSGSLPPELGLCSELRNIYLHMNKLTGSIPPQLGKLQKLTSLLLWGNALSGPIPAELSNCSSLVIFDVSSNDLSGEIPGDFGKLVVLQQLHLSDNSLTGKIPWQLSNCTSLATVQLDKNQLSGTIPWQIGKLKLLQSFFLWGNLVSGTIPSSFGNCTELYALDLSRNKLTGSIPDEIFNLKKLSKLLLLGNSLTGRLPPSVANCQSLVRLRVGENQLSGQIPKEIGQLQNLVFLDLYMNHFSGSLPVEIANITVLELLDVHNNYLTGEIPSVIGELENLEQLDLSRNSLTGEIPWSFGNFSYLNKLILNNNLLTGSIPKSIKNLQKLTLLDLSYNSLSGGIPSEIGHITSLTISLDLSSNAFTGEIPESLSALTQLQSLDLSHNLLYGGIKVLGSLTSLTSLNISYNNFSGPIPITPFFRTLSSNSYLQNSHLCQSIDGTTCSSSLIRKNGLKSAKTIALVMVILASVTIIVIASWILKVEKTLGALASTSGVEDFSYPWTFIPFQKLNFSIDNILDCLKDENVIGKGCSGVVYKAEMPNGELIAVKKLWKANKADERETMDSFAAEIQILGYIRHRNIVRLLGYCSNRSVKLLLYNYISNGNLRQLLQENRNLDWETRYKIAVGSAQGLAYLHHDCVPAILHRDVKCNNILLDSKYEAYLADFGLAKLMHSPNYHQAMSRVAGSYGYIAPEYGYSMNITEKSDVYSYGVVLLEILSGRSAVESHVGDGQHIVEWVKRKMGSFEPAVSILDAKLQGLPDQMVQEMLQTLGIAMFCVNSSPAERPTMKEVVALLMEVKSQPEEVGKTSQPLIKQSSTQS. 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07227 1077 SMART LRR_sd22_2 126 147 - -
Seca8g07227 1077 SMART LRR_sd22_2 583 602 - -
Seca8g07227 1077 SMART LRR_sd22_2 535 564 - -
Seca8g07227 1077 SMART LRR_sd22_2 150 176 - -
Seca8g07227 1077 SMART LRR_sd22_2 632 657 - -
Seca8g07227 1077 SMART serkin_6 778 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07227 1077 ProSiteProfiles Protein kinase domain profile. 778 1070 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07227 1077 ProSitePatterns Protein kinases ATP-binding region signature. 784 807 IPR017441 GO:0005524
Seca8g07227 1077 SUPERFAMILY RNI-like 303 691 - -
Seca8g07227 1077 MobiDBLite consensus disorder prediction 1058 1077 - -
Seca8g07227 1077 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 306 1052 - -
Seca8g07227 1077 Gene3D Ribonuclease Inhibitor 33 191 IPR032675 -
Seca8g07227 1077 Gene3D Ribonuclease Inhibitor 192 286 IPR032675 -
Seca8g07227 1077 Gene3D Ribonuclease Inhibitor 386 480 IPR032675 -
Seca8g07227 1077 MobiDBLite consensus disorder prediction 1060 1077 - -
Seca8g07227 1077 SMART LRR_typ_2 415 439 IPR003591 -
Seca8g07227 1077 SMART LRR_typ_2 126 150 IPR003591 -
Seca8g07227 1077 SMART LRR_typ_2 343 367 IPR003591 -
Seca8g07227 1077 SMART LRR_typ_2 295 319 IPR003591 -
Seca8g07227 1077 SMART LRR_typ_2 174 198 IPR003591 -
Seca8g07227 1077 SMART LRR_typ_2 632 659 IPR003591 -
Seca8g07227 1077 SMART LRR_typ_2 487 510 IPR003591 -
Seca8g07227 1077 SMART LRR_typ_2 583 607 IPR003591 -
Seca8g07227 1077 SMART LRR_typ_2 535 558 IPR003591 -
Seca8g07227 1077 ProSitePatterns Serine/Threonine protein kinases active-site signature. 900 912 IPR008271 GO:0004672|GO:0006468
Seca8g07227 1077 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 210 429 - -
Seca8g07227 1077 Pfam Protein kinase domain 780 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07227 1077 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 759 857 - -
Seca8g07227 1077 SUPERFAMILY Protein kinase-like (PK-like) 764 1052 IPR011009 -
Seca8g07227 1077 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 858 1070 - -
Seca8g07227 1077 Pfam Leucine Rich Repeat 537 559 IPR001611 GO:0005515
Seca8g07227 1077 Gene3D Transferase(Phosphotransferase) domain 1 858 1073 - -
Seca8g07227 1077 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 31 194 - -
Seca8g07227 1077 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 430 705 - -
Seca8g07227 1077 Pfam Leucine rich repeat 561 620 IPR001611 GO:0005515
Seca8g07227 1077 Pfam Leucine rich repeat 105 163 IPR001611 GO:0005515
Seca8g07227 1077 Pfam Leucine rich repeat 394 452 IPR001611 GO:0005515
Seca8g07227 1077 PRINTS Leucine-rich repeat signature 535 548 - -
Seca8g07227 1077 PRINTS Leucine-rich repeat signature 129 142 - -
Seca8g07227 1077 SUPERFAMILY L domain-like 55 404 - -
Seca8g07227 1077 Gene3D Ribonuclease Inhibitor 481 576 IPR032675 -
Seca8g07227 1077 Gene3D Ribonuclease Inhibitor 577 703 IPR032675 -
Seca8g07227 1077 Gene3D Ribonuclease Inhibitor 287 385 IPR032675 -
Seca8g07227 1077 Pfam Leucine rich repeat N-terminal domain 32 75 IPR013210 -
Seca8g07227 1077 Gene3D Phosphorylase Kinase; domain 1 753 857 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07227 Seca-Chr8 168563142 168566625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07227 28 1056 Receptor kinase-like Gene Family AT5G56040 46.021 0.0 858
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca8g07227 Pkinase 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07227 - - gmx:100819611 1845.09