Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca8g07223 | ATGGCGGCAGCAATGGCTTCAACGATGGCTCAGACTGCGGCAGTGGTTTCTCCAGCGGCGGCTCCGGCGGCGGCATTGGGCGGAGGACCATTTGCGAATGCGTCGCTATACGTAGGCGATCTCGAGGGGAACGTGAACGAGGGGCAACTTTATGATCTGTTCAGCCAGGTGGCTCAAGTCGTCTCGATTAGGGTTTGCAGGGATCAGACCAAGCGATCTTCTCTCGGTTACGCTTATGTCAACTTCGCCAACTCTCAGGATGCGACCAATGCAATGGAACTTCTGAACTTCACTCCTCTGAATGGGAAACCCATTCGTATTATGTTTTCTCAACGAGATCCAAGCATTCGGAAAAGTGGATATGCCAATGTGTTCATTAAGAACCTGGACACATCGATTGATAACAAGGCATTACATGACACTTTTGCTGCCTTTGGCACTGTACTTTCTTGTAAGGTGGCTGCTGACAGCAATGGTCAGTCAAAAGGGCATGGTTTTGTACAGTTTGACAATGAAGGGGCTGCTCAGAATGCCATCAAACAGTTGAATGGCATGCTGATAAATGATAAACAAGTTTATGTTGGACTCTTTGTTAGGCACCAGGAAAGGGCTCGAGCAAATGGCTCACCAAAGTTCACTAATGTGTATGTGAAAAACTTCTCTGAAACATTTACTGAAGAGGACCTGAAGCAGCTATTCGGCGCCTGTGGTACGATCACTAGTGCAACTATTATGAAAGATGTGAATGGGAAGTCCAGATGTTTTGGGTTTGTGAATTTCCAGAGTCCAGATTCTGCAGCTGCTGTAGTTGAGAAGTTAAATGGAACTGCTGTCAATGATGACAAGGTTTTATATGTGGGGAGAGCTCAGAGGAAATCAGAAAGAGAGGCTGAGTTGAAAGCCAAATTTGAGCAGGAAAAAATTAGCAGATATGAGAAATTACAAGGTGCTAATTTGTACTTGAAAAATCTTGATGACAGCTTCAATGACGGAAAATTGAAGGATCTATTTTCTGAGTTTGGAACTATAACATCTTGCAAGGTAATGGTGGATTTACATGGCCATAGCAAGGGTTCTGGATTTGTGGCCTTTTCTACTTCTGAGGAAGCAAGTAAAGCCATGAATGAAATGAATGGAAAGTTGATTGGACGGAAGCCTTTGTATGTTGCTGTGGCCCAGCGCAAAGAAGAAAGGAAGGCTCGTTTGCAGGCTCAATTTGCTCAAATCCGAGCACCTAGTGGAATGACACCTTTGCCAGCAGGAATTCCAGGATATCCAGGGGCAGCAAGACTTGCCCCTCAACAGTTGTATTTTGGTCAAGGCACACCTGGCTTCATACCACCTCAGCCTGCTGGATTTGGTTTCCAGCAACAAATCTTGCCTGGAATGCGTCCTGGTGTTGCTCCAAATTTCATTATGCCGTACCACCTTCAGAGACAGGGTCAGCCTGGGCAGAGAATGGGTGTTCGACGAAATGGAAACCTCCAACCAGTGCAGCAGAACCAAATGCTGCATCGTAATTCCAACCAAGGATTTAGATATATGGGCAACGGTCGAAATGGCATGGATCCGTCTGTAGTTCCTCAAGGTCTAGTGGGTCCTATGATGCCAATGCCCTTTGATGGTTCTGGAGTTACTGCAGCTCCTATCGATAATCAGCGTCCTGGGGTATCATCTACCACACTTGCCTCAGCTTTGGCTTCTGCTACCCCAGAAAACCAGCGTTTGATGTTGGGTGAACATCTATATCCCCTTGTGGACCGTCTTACACCAAACCAACAAACAGCAAAGGTGACAGGGATGTTGCTGGAAATGGACCAGTCAGAGGTAATACATCTTATTGAATCTCCTGAGGATCTGAAGATAAAGGTGTCTGAGGCAATGCAGGTCCTTCGTGAAGCTGCATCAGGTTCTGAAGTTGGTGATCAGCTTGGCTCGTTGTCATTGAATGAATGA | 1956 | 0.4627 | MAAAMASTMAQTAAVVSPAAAPAAALGGGPFANASLYVGDLEGNVNEGQLYDLFSQVAQVVSIRVCRDQTKRSSLGYAYVNFANSQDATNAMELLNFTPLNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGTVLSCKVAADSNGQSKGHGFVQFDNEGAAQNAIKQLNGMLINDKQVYVGLFVRHQERARANGSPKFTNVYVKNFSETFTEEDLKQLFGACGTITSATIMKDVNGKSRCFGFVNFQSPDSAAAVVEKLNGTAVNDDKVLYVGRAQRKSEREAELKAKFEQEKISRYEKLQGANLYLKNLDDSFNDGKLKDLFSEFGTITSCKVMVDLHGHSKGSGFVAFSTSEEASKAMNEMNGKLIGRKPLYVAVAQRKEERKARLQAQFAQIRAPSGMTPLPAGIPGYPGAARLAPQQLYFGQGTPGFIPPQPAGFGFQQQILPGMRPGVAPNFIMPYHLQRQGQPGQRMGVRRNGNLQPVQQNQMLHRNSNQGFRYMGNGRNGMDPSVVPQGLVGPMMPMPFDGSGVTAAPIDNQRPGVSSTTLASALASATPENQRLMLGEHLYPLVDRLTPNQQTAKVTGMLLEMDQSEVIHLIESPEDLKIKVSEAMQVLREAASGSEVGDQLGSLSLNE. | 652 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca8g07223 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 317 | 394 | IPR000504 | GO:0003723 | |
Seca8g07223 | 651 | FunFam | Polyadenylate-binding protein | 554 | 637 | - | - | |
Seca8g07223 | 651 | CDD | RRM2_I_PABPs | 120 | 195 | IPR045305 | - | |
Seca8g07223 | 651 | Gene3D | - | 313 | 416 | IPR012677 | - | |
Seca8g07223 | 651 | FunFam | Polyadenylate-binding protein | 203 | 299 | - | - | |
Seca8g07223 | 651 | FunFam | Polyadenylate-binding protein | 300 | 405 | - | - | |
Seca8g07223 | 651 | SMART | poly_2 | 570 | 634 | IPR002004 | GO:0003723 | |
Seca8g07223 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 213 | 291 | IPR000504 | GO:0003723 | |
Seca8g07223 | 651 | SMART | rrm2_1 | 318 | 390 | IPR003954 | GO:0003676 | |
Seca8g07223 | 651 | SMART | rrm2_1 | 35 | 108 | IPR003954 | GO:0003676 | |
Seca8g07223 | 651 | SMART | rrm2_1 | 123 | 195 | IPR003954 | GO:0003676 | |
Seca8g07223 | 651 | SMART | rrm2_1 | 214 | 286 | IPR003954 | GO:0003676 | |
Seca8g07223 | 651 | FunFam | Polyadenylate-binding protein | 123 | 196 | - | - | |
Seca8g07223 | 651 | Gene3D | - | 123 | 196 | IPR012677 | - | |
Seca8g07223 | 651 | Gene3D | - | 556 | 636 | - | - | |
Seca8g07223 | 651 | Gene3D | - | 30 | 122 | IPR012677 | - | |
Seca8g07223 | 651 | Gene3D | - | 197 | 311 | IPR012677 | - | |
Seca8g07223 | 651 | PANTHER | RNA BINDING PROTEIN | 33 | 96 | - | - | |
Seca8g07223 | 651 | Pfam | Poly-adenylate binding protein, unique domain | 566 | 631 | IPR002004 | GO:0003723 | |
Seca8g07223 | 651 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 558 | 636 | IPR002004 | GO:0003723 | |
Seca8g07223 | 651 | CDD | RRM3_I_PABPs | 212 | 292 | - | - | |
Seca8g07223 | 651 | Coils | Coil | 294 | 314 | - | - | |
Seca8g07223 | 651 | CDD | RRM4_I_PABPs | 316 | 394 | - | - | |
Seca8g07223 | 651 | SMART | rrm1_1 | 123 | 195 | IPR000504 | GO:0003723 | |
Seca8g07223 | 651 | SMART | rrm1_1 | 35 | 108 | IPR000504 | GO:0003723 | |
Seca8g07223 | 651 | SMART | rrm1_1 | 214 | 287 | IPR000504 | GO:0003723 | |
Seca8g07223 | 651 | SMART | rrm1_1 | 318 | 390 | IPR000504 | GO:0003723 | |
Seca8g07223 | 651 | SUPERFAMILY | RNA-binding domain, RBD | 34 | 200 | IPR035979 | GO:0003676 | |
Seca8g07223 | 651 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 34 | 632 | IPR006515 | GO:0003723 | |
Seca8g07223 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 34 | 112 | IPR000504 | GO:0003723 | |
Seca8g07223 | 651 | SUPERFAMILY | PABC (PABP) domain | 500 | 636 | IPR036053 | GO:0003723 | |
Seca8g07223 | 651 | FunFam | Polyadenylate-binding protein | 27 | 122 | - | - | |
Seca8g07223 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 122 | 199 | IPR000504 | GO:0003723 | |
Seca8g07223 | 651 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 319 | 387 | IPR000504 | GO:0003723 | |
Seca8g07223 | 651 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 215 | 282 | IPR000504 | GO:0003723 | |
Seca8g07223 | 651 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 36 | 106 | IPR000504 | GO:0003723 | |
Seca8g07223 | 651 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 124 | 192 | IPR000504 | GO:0003723 | |
Seca8g07223 | 651 | SUPERFAMILY | RNA-binding domain, RBD | 212 | 398 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca8g07223 | Seca-Chr8 | 168530664 | 168535231 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca8g07223 | 33 | 644 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 57.803 | 0.0 | 691 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca8g07223 | K13126 | - | gmx:100783163 | 1084.32 |