Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07223 ATGGCGGCAGCAATGGCTTCAACGATGGCTCAGACTGCGGCAGTGGTTTCTCCAGCGGCGGCTCCGGCGGCGGCATTGGGCGGAGGACCATTTGCGAATGCGTCGCTATACGTAGGCGATCTCGAGGGGAACGTGAACGAGGGGCAACTTTATGATCTGTTCAGCCAGGTGGCTCAAGTCGTCTCGATTAGGGTTTGCAGGGATCAGACCAAGCGATCTTCTCTCGGTTACGCTTATGTCAACTTCGCCAACTCTCAGGATGCGACCAATGCAATGGAACTTCTGAACTTCACTCCTCTGAATGGGAAACCCATTCGTATTATGTTTTCTCAACGAGATCCAAGCATTCGGAAAAGTGGATATGCCAATGTGTTCATTAAGAACCTGGACACATCGATTGATAACAAGGCATTACATGACACTTTTGCTGCCTTTGGCACTGTACTTTCTTGTAAGGTGGCTGCTGACAGCAATGGTCAGTCAAAAGGGCATGGTTTTGTACAGTTTGACAATGAAGGGGCTGCTCAGAATGCCATCAAACAGTTGAATGGCATGCTGATAAATGATAAACAAGTTTATGTTGGACTCTTTGTTAGGCACCAGGAAAGGGCTCGAGCAAATGGCTCACCAAAGTTCACTAATGTGTATGTGAAAAACTTCTCTGAAACATTTACTGAAGAGGACCTGAAGCAGCTATTCGGCGCCTGTGGTACGATCACTAGTGCAACTATTATGAAAGATGTGAATGGGAAGTCCAGATGTTTTGGGTTTGTGAATTTCCAGAGTCCAGATTCTGCAGCTGCTGTAGTTGAGAAGTTAAATGGAACTGCTGTCAATGATGACAAGGTTTTATATGTGGGGAGAGCTCAGAGGAAATCAGAAAGAGAGGCTGAGTTGAAAGCCAAATTTGAGCAGGAAAAAATTAGCAGATATGAGAAATTACAAGGTGCTAATTTGTACTTGAAAAATCTTGATGACAGCTTCAATGACGGAAAATTGAAGGATCTATTTTCTGAGTTTGGAACTATAACATCTTGCAAGGTAATGGTGGATTTACATGGCCATAGCAAGGGTTCTGGATTTGTGGCCTTTTCTACTTCTGAGGAAGCAAGTAAAGCCATGAATGAAATGAATGGAAAGTTGATTGGACGGAAGCCTTTGTATGTTGCTGTGGCCCAGCGCAAAGAAGAAAGGAAGGCTCGTTTGCAGGCTCAATTTGCTCAAATCCGAGCACCTAGTGGAATGACACCTTTGCCAGCAGGAATTCCAGGATATCCAGGGGCAGCAAGACTTGCCCCTCAACAGTTGTATTTTGGTCAAGGCACACCTGGCTTCATACCACCTCAGCCTGCTGGATTTGGTTTCCAGCAACAAATCTTGCCTGGAATGCGTCCTGGTGTTGCTCCAAATTTCATTATGCCGTACCACCTTCAGAGACAGGGTCAGCCTGGGCAGAGAATGGGTGTTCGACGAAATGGAAACCTCCAACCAGTGCAGCAGAACCAAATGCTGCATCGTAATTCCAACCAAGGATTTAGATATATGGGCAACGGTCGAAATGGCATGGATCCGTCTGTAGTTCCTCAAGGTCTAGTGGGTCCTATGATGCCAATGCCCTTTGATGGTTCTGGAGTTACTGCAGCTCCTATCGATAATCAGCGTCCTGGGGTATCATCTACCACACTTGCCTCAGCTTTGGCTTCTGCTACCCCAGAAAACCAGCGTTTGATGTTGGGTGAACATCTATATCCCCTTGTGGACCGTCTTACACCAAACCAACAAACAGCAAAGGTGACAGGGATGTTGCTGGAAATGGACCAGTCAGAGGTAATACATCTTATTGAATCTCCTGAGGATCTGAAGATAAAGGTGTCTGAGGCAATGCAGGTCCTTCGTGAAGCTGCATCAGGTTCTGAAGTTGGTGATCAGCTTGGCTCGTTGTCATTGAATGAATGA 1956 0.4627 MAAAMASTMAQTAAVVSPAAAPAAALGGGPFANASLYVGDLEGNVNEGQLYDLFSQVAQVVSIRVCRDQTKRSSLGYAYVNFANSQDATNAMELLNFTPLNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGTVLSCKVAADSNGQSKGHGFVQFDNEGAAQNAIKQLNGMLINDKQVYVGLFVRHQERARANGSPKFTNVYVKNFSETFTEEDLKQLFGACGTITSATIMKDVNGKSRCFGFVNFQSPDSAAAVVEKLNGTAVNDDKVLYVGRAQRKSEREAELKAKFEQEKISRYEKLQGANLYLKNLDDSFNDGKLKDLFSEFGTITSCKVMVDLHGHSKGSGFVAFSTSEEASKAMNEMNGKLIGRKPLYVAVAQRKEERKARLQAQFAQIRAPSGMTPLPAGIPGYPGAARLAPQQLYFGQGTPGFIPPQPAGFGFQQQILPGMRPGVAPNFIMPYHLQRQGQPGQRMGVRRNGNLQPVQQNQMLHRNSNQGFRYMGNGRNGMDPSVVPQGLVGPMMPMPFDGSGVTAAPIDNQRPGVSSTTLASALASATPENQRLMLGEHLYPLVDRLTPNQQTAKVTGMLLEMDQSEVIHLIESPEDLKIKVSEAMQVLREAASGSEVGDQLGSLSLNE. 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07223 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 394 IPR000504 GO:0003723
Seca8g07223 651 FunFam Polyadenylate-binding protein 554 637 - -
Seca8g07223 651 CDD RRM2_I_PABPs 120 195 IPR045305 -
Seca8g07223 651 Gene3D - 313 416 IPR012677 -
Seca8g07223 651 FunFam Polyadenylate-binding protein 203 299 - -
Seca8g07223 651 FunFam Polyadenylate-binding protein 300 405 - -
Seca8g07223 651 SMART poly_2 570 634 IPR002004 GO:0003723
Seca8g07223 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723
Seca8g07223 651 SMART rrm2_1 318 390 IPR003954 GO:0003676
Seca8g07223 651 SMART rrm2_1 35 108 IPR003954 GO:0003676
Seca8g07223 651 SMART rrm2_1 123 195 IPR003954 GO:0003676
Seca8g07223 651 SMART rrm2_1 214 286 IPR003954 GO:0003676
Seca8g07223 651 FunFam Polyadenylate-binding protein 123 196 - -
Seca8g07223 651 Gene3D - 123 196 IPR012677 -
Seca8g07223 651 Gene3D - 556 636 - -
Seca8g07223 651 Gene3D - 30 122 IPR012677 -
Seca8g07223 651 Gene3D - 197 311 IPR012677 -
Seca8g07223 651 PANTHER RNA BINDING PROTEIN 33 96 - -
Seca8g07223 651 Pfam Poly-adenylate binding protein, unique domain 566 631 IPR002004 GO:0003723
Seca8g07223 651 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 558 636 IPR002004 GO:0003723
Seca8g07223 651 CDD RRM3_I_PABPs 212 292 - -
Seca8g07223 651 Coils Coil 294 314 - -
Seca8g07223 651 CDD RRM4_I_PABPs 316 394 - -
Seca8g07223 651 SMART rrm1_1 123 195 IPR000504 GO:0003723
Seca8g07223 651 SMART rrm1_1 35 108 IPR000504 GO:0003723
Seca8g07223 651 SMART rrm1_1 214 287 IPR000504 GO:0003723
Seca8g07223 651 SMART rrm1_1 318 390 IPR000504 GO:0003723
Seca8g07223 651 SUPERFAMILY RNA-binding domain, RBD 34 200 IPR035979 GO:0003676
Seca8g07223 651 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 34 632 IPR006515 GO:0003723
Seca8g07223 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Seca8g07223 651 SUPERFAMILY PABC (PABP) domain 500 636 IPR036053 GO:0003723
Seca8g07223 651 FunFam Polyadenylate-binding protein 27 122 - -
Seca8g07223 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 199 IPR000504 GO:0003723
Seca8g07223 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 319 387 IPR000504 GO:0003723
Seca8g07223 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 282 IPR000504 GO:0003723
Seca8g07223 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Seca8g07223 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 192 IPR000504 GO:0003723
Seca8g07223 651 SUPERFAMILY RNA-binding domain, RBD 212 398 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07223 Seca-Chr8 168530664 168535231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07223 33 644 Eukaryotic Initiation Factors Gene Family AT1G71770 57.803 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07223 K13126 - gmx:100783163 1084.32