Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07209 ATGGGTGCTGCTTCGGAATCTGCTTCTGCTGAGTGTTTCAGCAAGGTGATGTCGTCTATGCCCGGTTTTCGCTTCCATCCCACGGATGAAGAGCTGATCATGTACTATCTGAAACGGAAAATTTGCGGGAAGAAGCTGAAGTTCAACGTGATTTGCGAAACCGATGTGTACAAATGGGATCCTGATGACTTGCCTGGGCAATCTTTTCTGCAAACTGGCGATAGGCAATGGTTCTTTTTCTGCCATAGAGATAGGAAGTATCCTAATGGTGGGAGGTCTAACCGAGCAACAAGACATGGGTACTGGAAAGCAACAGGAAAAGATCGAAATATAACATACAATTCTCGGTCAGTTGGAGTGAAGAAGACACTGGTTTTTTATGTAGGCAGAGCTCCTAATGGTGAGCGGACTGATTGGGTTATGCATGAATACACCATGGATGAAGAGGAGCTTAAGAGATGCCAGGGTGTTAAGGACTATTATGCACTTTACAAGGTTTACAAGAAAAGTGGACCTGGTCCTAAAAATGGTGAACAGTATGGTGCACCATTCAAAGAAGAAGAGTGGGCAGATGACGATGTTGTAGATTTTAATAGTAACTCAGCTGACCAAGTGCCTCCAAATGCCGTCTCTGACCCTGTTAATGATGAGTTGCAGCCTTTGTGTAATGATGAAATTGACGAGATCATTAGAGGATTTTTGGATTGTGAGCCTATCCTTGACCAACATGTGAATGGTTATCCTGACTTTCCTCAGGTTGTTGCTGAAGAAACACCAAGTATGGTTGTGGGTCAATTCTCTGAGGCTGCGATATTCTCTGAGCCAAGTGGAATTTTTCAGTCTAGCAGTCAGCATTATGATGTACAGCCCAGCTTTGACTTCAATCACTCGGTTACTTCTCACCTGCATGTTTCTGAAGCACCTGAGGTCACTTCTGCTCCCAACATTCAAAGAGAGGAGGAACTTCACTTTCATGAAGATGGCTTCTTGGAAATTAATGATCTCATTGATACCGAACCTACATTGTCAAATATGGAAAATCCTGTGGAGAACCTGCAGTTTGAAGATGGGTTAAGTGAACTTGATCTGTTCCAAGATGCAGAGATGTTTCTCCGTGACTTGGAGCATGAAACTGTTTCACATGCATATATGAATACTATTGACAACAATATTGAAAATCAAAATTACCAGTTGCTGCCCAATCCAGAGGAGGCCAATCAAACTGTCAGTGAATTCTGGATGCATGATGAAAGAAACATCCTGAGTGCAGCAGAAGGCTATGCTGCTTCTTTCTCTCCACCAATCCCAGGTATCGTATGTGAATCCTTCAACTTTCCTACTGAAGGCAATCAAAATCAAAGTAGCACTGTGGAAGATGTTAGTACAAGTAGATTCTCCTCTGCTCTCTGGGCCTTTGTTGAGTCAATACCTACCACTCCTGCATCAGCTGCTGAAAATGCTTTGGTGAATCGGGCTTTGAATCGAATGTCTAGCTTCAGCAGGGTGAAGATCAAGCACACCACCGTTGCTGCAGGTAAAGACACTCCAACTGTGAAGAGAGCAGGCATGAGGGGAGTTTCATTCATTTTCTTTCCGATTCTTATTGCTTTATGTGCTTTCTTGTGGGTTTCTATTGGAAATTTAAGACTATTAGGGAGATGTATCTCTCCGTGA 1674 0.4319 MGAASESASAECFSKVMSSMPGFRFHPTDEELIMYYLKRKICGKKLKFNVICETDVYKWDPDDLPGQSFLQTGDRQWFFFCHRDRKYPNGGRSNRATRHGYWKATGKDRNITYNSRSVGVKKTLVFYVGRAPNGERTDWVMHEYTMDEEELKRCQGVKDYYALYKVYKKSGPGPKNGEQYGAPFKEEEWADDDVVDFNSNSADQVPPNAVSDPVNDELQPLCNDEIDEIIRGFLDCEPILDQHVNGYPDFPQVVAEETPSMVVGQFSEAAIFSEPSGIFQSSSQHYDVQPSFDFNHSVTSHLHVSEAPEVTSAPNIQREEELHFHEDGFLEINDLIDTEPTLSNMENPVENLQFEDGLSELDLFQDAEMFLRDLEHETVSHAYMNTIDNNIENQNYQLLPNPEEANQTVSEFWMHDERNILSAAEGYAASFSPPIPGIVCESFNFPTEGNQNQSSTVEDVSTSRFSSALWAFVESIPTTPASAAENALVNRALNRMSSFSRVKIKHTTVAAGKDTPTVKRAGMRGVSFIFFPILIALCAFLWVSIGNLRLLGRCISP. 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07209 557 Gene3D NAC domain 28 171 IPR036093 GO:0003677|GO:0006355
Seca8g07209 557 Pfam No apical meristem (NAM) protein 21 145 IPR003441 GO:0003677|GO:0006355
Seca8g07209 557 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Seca8g07209 557 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 284 - -
Seca8g07209 557 SUPERFAMILY NAC domain 16 169 IPR036093 GO:0003677|GO:0006355
Seca8g07209 557 FunFam Nac domain-containing protein 86 28 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07209 Seca-Chr8 168440812 168445746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07209 5 555 NAC Transcription Factor Family AT1G34190 43.568 4.55e-140 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca8g07209 NAM 8.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07209 - - gmx:100794925 880.167