Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07208 ATGGCCTCCTCCCAGTCCCAGCATCGCTGCGTTTTTGTTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTATTGAAATCTGCAAGGAGGTTGGTCCTGTTGTCTCATTCAGATTAGTTATTGATCGAGAAACCGGGAAACCAAAAGGTTATGGGTTCTGTGAGTATAAGGATGAAGAGACAGCTTTAAGTGCTCGTCGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGTGTTGATTTTGCTGAAAATGATAAAGGGACTGATAGGAATCGAGAACAGGGTCGCGGTGGGCCTGGAATGACAGCAAATGTTGACCCTCAGAAACAAGTAGGCATCTCAGCTGTCCATGGGGAAGCTGTTCAGCATCAACCTATTGGTCTTCATATCGCCATAACAGCCGCGGCTGTCATGACAGCAGCTCTTGGTGGTGCTCAATCAGGCATCCAGTCAAATCAAAATGGATTGCAAAGTCAGTCAGCATTGGCACATGATCCTTTAACTCTGCATCTGGCCAAAATGTCCAGGAGTCAGCTGACTGAGATTATCTCTGAGCTCAAGGGAATGGCTACACAAAACAAGGAACTGGCTCGCCAGCTGTTGCTTTCAAGGCCACAGTTGCCTAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGAATGGTGACCTCCCAAGTGTTACAAATGCCAAACCTTAGACTGGTTTCAGATCAAACCTCACAGTCTTTAATGAATGAAGGCCACCTGGGTCAGCCAGCATTGGTTCAAACTTTGTCTGGCCTACCTCCTTTTGGACAGAGCAAGTTGCAGTCTGGTCTGACACCTTACATTCAAGAAGGTCAAGTCAGCACCATACCTCATAATCCTTTGGCTCCTAATCAATTAACTGCACATCCAAAGCCTCCAGTGCAGCCTCGAATTCCCCTTCAACATCATCCAAGCAACCCTGTTGTACAGCTGGGAACAATGTCAGGGCAGTCTAATTTAATGCTTCCTTCTGTGCGTCCATTGTCATTGGGCAGTTTGTCTGTCAGACCTCCAATTCAATTGGCAACTTCGACTGCTTTGAACCAGCAAATGCACGCCTCATTGCCACAGCATCCAGTACGTGTTGGAAGCTCAACTATTGGACATAATATTCAAATGGTTCGTCCAGATGCAAGCTTTCAGCCTGGGCCTTCCATATCATCAGGTATTTCTCAGTTAAGTAGTAAGGAAGGTGATAGATCTTCAAACATGCCTTCTGGAGTTGAGAAAACAAACATGGTTCGTGATATTTCAGAATCTTTTACTCGCCCATTGAAGCTCATGAGATTGGATGAGGCAAGGGGCACCTCTCTTTCTGCGGGGATTTCAGACATTCCTGTCACCAATGGATCATCCCATGTTCTTGGAAGTACCTCATTACCTGTACCTGCAGCTCCTAAAGCAGAAGTGCGGTACTCTGAGCAACAATCTTCTCAGGTATGTGTCACTTGGTGA 1488 0.461 MASSQSQHRCVFVGNIPYDATEEQLIEICKEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGTDRNREQGRGGPGMTANVDPQKQVGISAVHGEAVQHQPIGLHIAITAAAVMTAALGGAQSGIQSNQNGLQSQSALAHDPLTLHLAKMSRSQLTEIISELKGMATQNKELARQLLLSRPQLPKALFQAQIMLGMVTSQVLQMPNLRLVSDQTSQSLMNEGHLGQPALVQTLSGLPPFGQSKLQSGLTPYIQEGQVSTIPHNPLAPNQLTAHPKPPVQPRIPLQHHPSNPVVQLGTMSGQSNLMLPSVRPLSLGSLSVRPPIQLATSTALNQQMHASLPQHPVRVGSSTIGHNIQMVRPDASFQPGPSISSGISQLSSKEGDRSSNMPSGVEKTNMVRDISESFTRPLKLMRLDEARGTSLSAGISDIPVTNGSSHVLGSTSLPVPAAPKAEVRYSEQQSSQVCVTW. 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07208 495 MobiDBLite consensus disorder prediction 386 419 - -
Seca8g07208 495 MobiDBLite consensus disorder prediction 392 419 - -
Seca8g07208 495 SMART rrm1_1 10 83 IPR000504 GO:0003723
Seca8g07208 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Seca8g07208 495 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 387 - -
Seca8g07208 495 Gene3D - 150 232 - -
Seca8g07208 495 CDD RRM_CSTF2_RNA15_like 9 85 - -
Seca8g07208 495 FunFam Cleavage stimulating factor 64 2 118 - -
Seca8g07208 495 Gene3D - 1 114 IPR012677 -
Seca8g07208 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Seca8g07208 495 MobiDBLite consensus disorder prediction 86 109 - -
Seca8g07208 495 SUPERFAMILY RNA-binding domain, RBD 5 104 IPR035979 GO:0003676
Seca8g07208 495 FunFam Cleavage stimulating factor 64 157 232 - -
Seca8g07208 495 Pfam Hinge domain of cleavage stimulation factor subunit 2 163 230 IPR025742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07208 Seca-Chr8 168426233 168435934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07208 11 84 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 2.06e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07208 K14407 - gmx:100794399 769.615