Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07202 ATGGAAAACCTTCCCCAATTGATTTACAAAAATCCTATTAGAAGAACCTCTAGGCGATCTACAATGTATCTTGGTGTTAGAAAAAGGCCATGGGGAAGATATGCTGCTGAGATTAGGAACCCATATACCAAAGAGAGACATTGGTTAGGCACATTTGACACTGCAGAAGAAGCTGCTATAGCTTATGATCTTTCATCTATCAAGATTTGTGGCATTGATAATGCTAGAACTAATTTTCATTACCCTTTTATATCTATTCCACCACCTCCTCTGTCATTGCCTCCTCCACCTCCTCCACCAACCCCTGAGTTGGATCAAAGTGTTCAAGCTTGTCCAGAGATGATTGCTGCTTATGCTTATAATGGTGATGATGAATCTCTAGTTATTGCTTCCATCTTGCAAAGTTTTTCTAATTCTGGTAACTGTTCTTTTTAG 435 0.3908 MENLPQLIYKNPIRRTSRRSTMYLGVRKRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAIAYDLSSIKICGIDNARTNFHYPFISIPPPPLSLPPPPPPPTPELDQSVQACPEMIAAYAYNGDDESLVIASILQSFSNSGNCSF. 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07202 144 Pfam AP2 domain 24 69 IPR001471 GO:0003700|GO:0006355
Seca8g07202 144 CDD AP2 23 79 IPR001471 GO:0003700|GO:0006355
Seca8g07202 144 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Seca8g07202 144 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Seca8g07202 144 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Seca8g07202 144 ProSiteProfiles AP2/ERF domain profile. 22 80 IPR001471 GO:0003700|GO:0006355
Seca8g07202 144 SMART rav1_2 22 86 IPR001471 GO:0003700|GO:0006355
Seca8g07202 144 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 100 - -
Seca8g07202 144 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07202 Seca-Chr8 168374337 168374771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07202 23 81 AP2-EREBP Transcription Factor Family AT1G12890 76.271 8.89e-27 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g07202 AP2 3.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07202 - - gmx:100816937 234.187