Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07188 ATGGCCGGCAATTCTGCAACCGCCTCCTCCGCCCCCGCGTTTTCTCGCGAGAAATTGAATTTCTCTCCCGATTTCCCCGCACGAATCCCTCTCACTTCTGATCAGGTCAAGTACTGCACCGAGGCGCTCACCTTGTTGAAGGACAAGCTCCGCACTCCTCACACCATCTCCCAAGAGTTCGCTCACTTGCAGGCGAACAGGATAACGCCGAGTGAGATGGGGAGAAGATGCAACGTAGCTCTTGATGCTGTCAATGCGAGCAAAAATCGATATAGAGACGTGATACCATTTGACAAGAACAGGATTGTTCTCAAATCAAGTACAGATTATAGGCCTGCAGCACTGGGGTATATCAATGCAAGCTTTATCTCGACCTCCTCCCCTGGAACTGTGTCCCAGTTTATAGCTACTCAAGGACCATTGCCACACACTTATGAGGATTTCTGGGAAATGATTATCCAATATCACTGCCCTGCAATTGTGATGCTTACTAGGTTGGTCGACAATTACAAGATGATAAAGTGTGGAGATTATTTTCAAGCTGAGGATGGACCTAGAGAATTTGGAAATGTCTCCATTACCAGTAAATGGATACAAACTACTGAATCTTCGCTGGTGCTGCGTCATTTAGAGGTCAACCATAGAGAGGCAGAAGATACAGGTACAGCCTTATCTGTTTTGCATATTCAATATCCTGAATGGCCTGATCATGGAGTTCCAAACAATACATTTTCTGTGCGTGAAATTTTGAAAAGATTATACCACTTACCACCAGAGCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTATTGGTAGAACGGGAACCTACTGCACAATTCACAACACAATTCAGAGAATACTTGCTGGTGATATGTCTGCTGTAGATATTGCTAACACAATAGCTGTGTTCAGGTCCCAGCGTATTGGAATGGTTCAGACCCAGGATCAGTACGTTTTCTGCTATGAAGCTATCATAGATGAACTGGAGGACCTTGTATCTCAACAGGTTTGTCTGGTCCTCGCTGTGCCTTGTTTATATGAGAATGAGATTGAGAACTCACTGGCACTAGGGATATTAACGAATGCGCAAGTGAAGCTACAGTTCCTGTTCCAGTTCCGGGGCAGGGGAGAGCGTGTGTGTGTCTCTGTGTTTGTGAAGTTGATGGACTGGAGCTGTAGAGGTGATCAGAATTGGTCATGGAAAGCCACTGTAGATGGTGTAGCTGTAGATAATAATGCATCTGGTGAAAGCTCAAGGCATGCTAATGGTCATGCTAATAATGCGCCTGGAATGGCTTATCAATCTCTTGGACTTACTGGAAGCATAAATAGCAATTCAACTCTGCCTCCTGCTGATGATGACTTGGATAAGCATCAACGAGAATCATTTTCCTTTACTGGATTGGAAAAGGTTTCATATGGGTCCAGTGCTGATGATATCAATGATGGGATTCCTCGCCTGTCCAGGGTATCAGAAGTGAGTTCACTTTTGGGCAGAGCTGGTACAGCTGGGCTTGGCAAAGCAGTAGAAGTTTTGGACACACTAGGTAGTAGTATGACAAATTTGAATCTGAGTAGTGGTTTTACATCGGGTGTGACAACAAAAGGAAATAAAATTTCAATTTTGGCCTTCGAAGTTGCTAACACAATTGTTAAGGGTGCCAATCTGATGCAATCTCTTTCAAAAGAGAACATTAGGCATTTAAAAGAAGTGGTTCTACCATCTGAAGGAGTGCAAAATTTGATATCTAGAGATATGGATGAACTCCTAAGAATTGCTGCAGCAGACAAGAGAGAAGAATTGAAAATATTTTCTGGTGAAGTCGTGCGTTTTGGAAATCGTTGTAAAGATCCTCAGTGGCACAACCTGGATCGCTATTTTGAGAAGTTAGGTTCAGAGCTTACACCACAAAAGCAATTGAAAGAGGAGGCAGAAATGGTGATGCAACAACTAATGACCTATGTTCAATATACAGCTGAATTATATCATGAATTGCATGCCTTAGACAGGTTTGATCAAGATTATCGGCGCAAGCTTCAAGAAGAGGATAATTCGAATGCCACACAGAGAGGAGACAGCCTTACAATTTTAAGAGCAGAACTGAAGAGTCAAAAGAAACATGTAAGAAATTTGAAGAAAAAATCACTGTGGTCCAAGATTTTGGAGGAGGTGATGGAAAAGCTTGTAGACATAGTTCATTTTATATATTTGGAGATACATGAAGCGTTTGGTAGTGCAGATACTGATAAGCAAGTGAAAGATTCTCAAGGCAACCAAAAGAAGTTGGGGTCTGCTGGTCTTGCTTTGCATTATGCAAACATTATCACTCAAATTGATACTCTGGTGTCCCGATCAAGTTCTGTGCCTCCTAATACAAGGGATGCCTTATATCAAGGGCTGCCACCAAATGTAAAGTCGGCATTGCGCTCAAGATTACAGTCATTTCAAGTTAAAGAAGAGCTTACTGTCCCACAAATTAAAGCTGAAATGGAGAAAACCTTGCAGTGGCTTGTTCCTATTGCCGCCAACACAACAAAAGCTCATCATGGCTTTGGATGGGTTGGAGAATGGGCAAATACAGGATCCGATGTCAACCGCAAACCTGCGGGCCAGACTGACTTGTTGAGAATTGAAACACTACACCATGCTGATAAAGACAAAACAGAAGGTTATATACTTGAACTGGTTGTCTGGCTCCACCATCTTGTCAGCCAAGTAAGAGTTGGTAATGGAGGAATAAGGTCACCAGTCAAATCTCCGATTCGTTCTCCTAACCAGAAGACAGGGCAGTTATTTACACAGAAAGCATGCTCTACTTCTCCCATGTTAACATTTGAAGATCAACAAATGCTTAGAGATGTTGGTAAGAGGAAACTAACACCAGGCATTAGTAAGAGCCAGGAATTTGACACTGCCAAGAATAGGTTGAGTAAGCACCATAGGCTAAGCAAGAGTAGTAGTCATTCCCCAATCAGTGAAAGTAAAAATGATATATTCTCTACAAGGAGGTTACCTTCTGTTCCTGTCATAGACTTTGATATTGACCGAATGAAAGCCTTGGATGTCATTGATAGGGTGGATACCATTGGAAGTTCATAA 3102 0.4275 MAGNSATASSAPAFSREKLNFSPDFPARIPLTSDQVKYCTEALTLLKDKLRTPHTISQEFAHLQANRITPSEMGRRCNVALDAVNASKNRYRDVIPFDKNRIVLKSSTDYRPAALGYINASFISTSSPGTVSQFIATQGPLPHTYEDFWEMIIQYHCPAIVMLTRLVDNYKMIKCGDYFQAEDGPREFGNVSITSKWIQTTESSLVLRHLEVNHREAEDTGTALSVLHIQYPEWPDHGVPNNTFSVREILKRLYHLPPELGPIVVHCSAGIGRTGTYCTIHNTIQRILAGDMSAVDIANTIAVFRSQRIGMVQTQDQYVFCYEAIIDELEDLVSQQVCLVLAVPCLYENEIENSLALGILTNAQVKLQFLFQFRGRGERVCVSVFVKLMDWSCRGDQNWSWKATVDGVAVDNNASGESSRHANGHANNAPGMAYQSLGLTGSINSNSTLPPADDDLDKHQRESFSFTGLEKVSYGSSADDINDGIPRLSRVSEVSSLLGRAGTAGLGKAVEVLDTLGSSMTNLNLSSGFTSGVTTKGNKISILAFEVANTIVKGANLMQSLSKENIRHLKEVVLPSEGVQNLISRDMDELLRIAAADKREELKIFSGEVVRFGNRCKDPQWHNLDRYFEKLGSELTPQKQLKEEAEMVMQQLMTYVQYTAELYHELHALDRFDQDYRRKLQEEDNSNATQRGDSLTILRAELKSQKKHVRNLKKKSLWSKILEEVMEKLVDIVHFIYLEIHEAFGSADTDKQVKDSQGNQKKLGSAGLALHYANIITQIDTLVSRSSSVPPNTRDALYQGLPPNVKSALRSRLQSFQVKEELTVPQIKAEMEKTLQWLVPIAANTTKAHHGFGWVGEWANTGSDVNRKPAGQTDLLRIETLHHADKDKTEGYILELVVWLHHLVSQVRVGNGGIRSPVKSPIRSPNQKTGQLFTQKACSTSPMLTFEDQQMLRDVGKRKLTPGISKSQEFDTAKNRLSKHHRLSKSSSHSPISESKNDIFSTRRLPSVPVIDFDIDRMKALDVIDRVDTIGSS. 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07188 1033 PRINTS Protein tyrosine phosphatase signature 311 321 IPR000242 GO:0004725|GO:0006470
Seca8g07188 1033 PRINTS Protein tyrosine phosphatase signature 134 154 IPR000242 GO:0004725|GO:0006470
Seca8g07188 1033 PRINTS Protein tyrosine phosphatase signature 262 280 IPR000242 GO:0004725|GO:0006470
Seca8g07188 1033 PRINTS Protein tyrosine phosphatase signature 224 241 IPR000242 GO:0004725|GO:0006470
Seca8g07188 1033 PRINTS Protein tyrosine phosphatase signature 295 310 IPR000242 GO:0004725|GO:0006470
Seca8g07188 1033 PRINTS Protein tyrosine phosphatase signature 116 123 IPR000242 GO:0004725|GO:0006470
Seca8g07188 1033 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 247 319 IPR000387 GO:0016311|GO:0016791
Seca8g07188 1033 FunFam Tyrosine-protein phosphatase non-receptor type 12 33 336 - -
Seca8g07188 1033 Pfam Domain of unknown function (DUF3475) 542 598 IPR021864 GO:0045927
Seca8g07188 1033 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 42 330 IPR029021 -
Seca8g07188 1033 SMART PTPc_3 55 330 IPR000242 GO:0004725|GO:0006470
Seca8g07188 1033 Gene3D Protein tyrosine phosphatase superfamily 31 338 IPR029021 -
Seca8g07188 1033 Pfam Protein of unknown function (DUF668) 763 847 IPR007700 GO:0045927
Seca8g07188 1033 Pfam Protein-tyrosine phosphatase 85 326 IPR000242 GO:0004725|GO:0006470
Seca8g07188 1033 CDD PTPc_plant_PTP1 117 323 - -
Seca8g07188 1033 MobiDBLite consensus disorder prediction 963 997 - -
Seca8g07188 1033 SMART ptp_7 225 327 IPR003595 -
Seca8g07188 1033 ProSiteProfiles PTP type protein phosphatase domain profile. 56 328 IPR000242 GO:0004725|GO:0006470
Seca8g07188 1033 ProSitePatterns Tyrosine specific protein phosphatases active site. 265 275 IPR016130 GO:0016311|GO:0016791
Seca8g07188 1033 PANTHER OS01G0873900 PROTEIN 465 1029 IPR045021 GO:0045927
Seca8g07188 1033 Coils Coil 695 715 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07188 Seca-Chr8 168208961 168225406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07188 34 334 Protein tyrosine phosphatase (PTP) family AT1G71860 67.774 7.41e-152 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07188 - - gmx:100811297 1103.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07188 8 168208961 168225406 Seca8g07188 8 168208961 168225406 ECH