Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07180 ATGGGTACGTCGAATCTACTCTTGTTTTTCTTCTCTCTGGTGAGTCTGTATGCTATGGCGGCTTCCAAGGTTGTGCTGATTGGGAACAATATCACTCTCTCATTCGATGATATTGAAGCTAATTTCGCTCCAACAGTCAAAGGTTCTGGAGAATATGGAGTCTTATATTTGGCAGAGCCACTTGATGCATGTACAGAACTGAGAAATAAAGCTGAACAACTTCCAAATGCAAGTTCACCTTTTGTTTTGGTGATTAGAGGGGGATGTAGCTTTGAGGAAAAGGTCAGAAAGGCACAAGATGCTGGCTTCAAATCTGCTATTGTCTATGACAATGAAGATGGTGGTGTCTTGGTTGCAAGTAATGACCAATTCTTACTGGCAGGAAATTCTGCTGGTATAAGAATACATGCAGTATTTGTATCAAAAGCTTCGGGTGAAACACTAAAGAAATATGCTGGGTTGTCTGATGTGGAAGTATGGCTCATTCCAACTTTTGAAAACTCAGCATGGTCTATCATGGCAATTTCGTTTATTTCCCTACTAGCTATGTCTGCAGTGCTGGCCACTTGTTTCTTCGTCCGCAGGCATCGCATAAGAAGAGAAAGGCCACGAGCTTCTCGTGTTCGTGAATTTCATGGTATGAGTAGTCGCCTAGTGAAAGCAATGCCAAGTTTGATATTTACTGCTGTTTTGGAAGATAATTGTACATCAAGAACATGTGCTATCTGCCTTGAAGACTATTGCGTTGGAGAGAAGCTCAGGATTCTGCCCTGCTGTCACAAGTTTCATGCTGCTTGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGTCCAGTTTGCAAGCGTGATGCTAGAACTGGCCTATGTGATCCACCACCTTCAGAATCCACACCTCTGCTCTCATCAACCCCAGCATCTGTGGCATCCTCTGTCTTATCTTCTGTGAGGTCATCATTAGCTTCATCTTCAGCAATACAAATTACCCGGGGAATTTCACAATCTCCATCCGTTTCTCGTAACCACTCTTTAGCTAGTACCCCTTGTGTTCAGCCATCTCTTAGGTCCTTCCGGCAATCCCCCTCCTTAAGCATCAGCCGTAGCTCTGTAGATCTTAGGAATGCATCCCAAAGATCTCTTGCTTCCCACTTGAACTCACCGCGTTCCATTGGTTATCCATCTTTGTCATCTCTTAACTCAAGGTACTTGTCTCCTTACATTCCAAGTCCAAGCAATGCTTCAGTGAGTTTTATGGGGTCATCCAGTCATCGACAGCATCCACTCCGTTATAGTGAGTCAGCCGCGAGCTTCTCACCGTTTGCCTCTGCAAACTCCCTTCCGGAATGTTAA 1350 0.4422 MGTSNLLLFFFSLVSLYAMAASKVVLIGNNITLSFDDIEANFAPTVKGSGEYGVLYLAEPLDACTELRNKAEQLPNASSPFVLVIRGGCSFEEKVRKAQDAGFKSAIVYDNEDGGVLVASNDQFLLAGNSAGIRIHAVFVSKASGETLKKYAGLSDVEVWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRASRVREFHGMSSRLVKAMPSLIFTAVLEDNCTSRTCAICLEDYCVGEKLRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLCDPPPSESTPLLSSTPASVASSVLSSVRSSLASSSAIQITRGISQSPSVSRNHSLASTPCVQPSLRSFRQSPSLSISRSSVDLRNASQRSLASHLNSPRSIGYPSLSSLNSRYLSPYIPSPSNASVSFMGSSSHRQHPLRYSESAASFSPFASANSLPEC. 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07180 449 ProSiteProfiles Zinc finger RING-type profile. 240 282 IPR001841 -
Seca8g07180 449 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 22 162 - -
Seca8g07180 449 SUPERFAMILY PA domain 81 163 IPR046450 -
Seca8g07180 449 CDD PA_C_RZF_like 13 169 IPR044744 -
Seca8g07180 449 Gene3D - 22 162 - -
Seca8g07180 449 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 164 296 - -
Seca8g07180 449 SMART ring_2 240 281 IPR001841 -
Seca8g07180 449 Pfam PA domain 79 148 IPR003137 -
Seca8g07180 449 Pfam Ring finger domain 239 282 IPR001841 -
Seca8g07180 449 SUPERFAMILY RING/U-box 230 288 - -
Seca8g07180 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 287 IPR013083 -
Seca8g07180 449 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 200 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07180 Seca-Chr8 168039040 168045151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07180 17 448 C3H Transcription Factor Family AT1G22670 48.081 2.06e-120 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07180 K15692 - gmx:100791248 686.411