Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07177 ATGCCAACACCAACGGCAACAGCAACAGCAACGTTTGGTGCTGTAGAAACACCAAATGGAGACTCATCCAACACTCATGCCCTTTCCAAACACAGCCCTCAAGAATTGCGTGACCTCCCTCCTTTTCTGTCTTCTTCTTATCCCATCACTCTTAAGTTCATGGACGTGGGATACCGATTGAAGATAGAGAACAAACAAGGAAGCGGAGGGTGCATCAAGAAATTTTTTACCACGCTCGAGTCATCACCGTCTGATCAGAGATCAACGGTCAGAGCGCCACAAGAGCGAACCATTCTGAACGGCGTAACAGGGATAGCTTACCCAGGGGAGATCCTAGCCATCCTGGGCCCATCAGGGAGTGGAAAATCAACGCTCCTAAACGCCCTCGCAGGGAGGCTCCATGGAAACGGCCTCACCGGAACAATCCTCGCTAACTCGTCCAAACTCAACAAATCAGTTCTCCGGCGAACCGGATTCGTTACACAGGACGACATCCTCTACCCTCACCTAACTGTCCGCGAGACTCTAGTGTTCTGCTCCATGCTGCGCCTCCCGAGGACGCTGCCGCGAGCGGCGAAGGTGGCGGCGGCGGAGTCGGCGATCGCGGAGTTAGGGCTAGGGAAGTGCCAGGACACTATAATAGGAAACAGCTTCATCCGCGGCGTTTCCGGTGGAGAGAGGAAGCGCGTGAGCATCGCGCACGAGATGCTGGTGGACCCGGCGTTGCTGATTCTGGACGAGCCTACCTCCGGTCTGGACTCCACGGCTGCGCACCGCCTTGTGTCGACGCTGGGATCGCTGGCGAAGAAGGGAAAGACGGTGGTGACGTCGGTGCACCAGCCTTCAAGCCGCGTGTACCAGATGTTCGACAAAGTGCTGGTTCTGTCGGAAGGTCACTGTTTGTATTTCGGCAAAGGAAACGACGCCATGCGCTACTTCGAGTCGGTTGGGTTCGCGCCATCTTTCCCAGTGAATCCGGCGGATTTTCTGCTCGATCTCGCTAACGGTGTGTTTGCCATGTTGAAGGTCTGA 1032 0.5552 MPTPTATATATFGAVETPNGDSSNTHALSKHSPQELRDLPPFLSSSYPITLKFMDVGYRLKIENKQGSGGCIKKFFTTLESSPSDQRSTVRAPQERTILNGVTGIAYPGEILAILGPSGSGKSTLLNALAGRLHGNGLTGTILANSSKLNKSVLRRTGFVTQDDILYPHLTVRETLVFCSMLRLPRTLPRAAKVAAAESAIAELGLGKCQDTIIGNSFIRGVSGGERKRVSIAHEMLVDPALLILDEPTSGLDSTAAHRLVSTLGSLAKKGKTVVTSVHQPSSRVYQMFDKVLVLSEGHCLYFGKGNDAMRYFESVGFAPSFPVNPADFLLDLANGVFAMLKV. 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07177 343 Pfam ABC-2 type transporter 279 338 IPR043926 GO:0140359
Seca8g07177 343 Pfam ABC transporter 100 250 IPR003439 GO:0005524
Seca8g07177 343 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 315 IPR027417 -
Seca8g07177 343 MobiDBLite consensus disorder prediction 13 39 - -
Seca8g07177 343 SMART AAA_5 108 299 IPR003593 GO:0016887
Seca8g07177 343 FunFam ABC transporter G family member 22 86 316 - -
Seca8g07177 343 MobiDBLite consensus disorder prediction 13 30 - -
Seca8g07177 343 Gene3D - 86 316 IPR027417 -
Seca8g07177 343 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 84 322 IPR003439 GO:0005524
Seca8g07177 343 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 30 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07177 Seca-Chr8 168012262 168018213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07177 98 310 Calmodulin-binding Proteins AT2G36910 31.250 8.89e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07177 K05681 - gmx:100812127 548.51