Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07173 ATGGGAATTTCTTCACAGCCTTCTTTTGTTCCCCTCACTTTGAAAGATCTGCTTCAGGGAACTGAAGAAAACAGGAATTCATCATATGGGTATTTGTGGAGCAAAGTCTTGGCTGCCCAAGTGAAGAAGCAGAAGATCATGAAGAAAAGTGTTAACAATAGGAGGTCAAGAACAAGAAGGGTGTTGATGAAGAGAAGAGGTGGTTCTAGAAGAGGATCCAATTCCAATGGGATACAGAGACGTGTGAGAACATTGAAGAGCCTTATACCAAATAGTAATAACTCCATGGGGTTGGATGGACTCTTCAGAGAGACAGCTGATTACATATTGGCTTTACAAACGAGAGTGAGAGTCATGCAGGTTATGGTTCAGGTATTGACAGGGTATGATGAGTGA 396 0.4192 MGISSQPSFVPLTLKDLLQGTEENRNSSYGYLWSKVLAAQVKKQKIMKKSVNNRRSRTRRVLMKRRGGSRRGSNSNGIQRRVRTLKSLIPNSNNSMGLDGLFRETADYILALQTRVRVMQVMVQVLTGYDE. 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07173 131 CDD bHLH_AtIBH1_like 68 114 IPR044549 GO:0006355
Seca8g07173 131 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 27 126 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07173 Seca-Chr8 167952709 167953104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07173 54 127 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G47270 56.098 8.79e-23 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07173 - - gmx:100794627 144.436