Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07172 ATGCAGAGGTACGGTTTTGCATCAAAATCTTCTTCAAAATGCAATACTGTTTTGCCATATCAAACCCCAAGGCTGAGGGACCACTACCTTCTTGGGAAGAAGCTTGGGCAAGGCCAATTTGGCACCACATACCTCTGCACCCACAAAGCCACAGGGAAACTCTATGCCTGCAAATCCATCCCAAAAAGGAAGCTTTTGTGCCAAGAGGATTATGATGATGTATGGAGAGAGATTCAGATCATGCACCATTTGTCAGAGCACCCAAATGTGGTCCAGATACAGGGAACCTATGAGGATTCTGTGTTTGTGCACCTGGTCATGGAGCTCTGTGCTGGGGGTGAACTTTTTGATAGGATAATTCAGAAGGGGCATTACAGCGAGAAAGAGGCTGTAAAGTTGATAAAGACCATTGTTGGGGTGGTGGAGGCATGTCACTCTCTTGGGGTCATGCATAGGGATCTCAAGCCTGAGAATTTCTTGTTTGATACCCCTGGTGAAGATGCTAAGATGAAGGCCACGGATTTTGGTCTCTCTGTGTTCTACAAGCCAGGACAAGCCTTTCATGATGTAGTTGGAAGTCCCTACTATGTTGCCCCTGAGGTGTTGTGCAAGCAATATGGACCAGAAGTGGATGTATGGAGTGCTGGTGTTATCCTATACATCTTGTTGAGTGGGGTCCCACCTTTCTGGGCTGGTAATGATCCTAATATGGATTTTGTTAAGCTTTTCTTCTCTGTTTATTATTTAGTCATCTACTTGTTATGTTTTTTTTTTGTGCCTGAGCTACATTCACCTTTTCTATTACCTTCAGAAACAGAATCAGGAATTTTCAGGCAGATTTTACATGGAGAGCTTGATTTTGTATCTGAACCGTGGCCAATTATCTCAGAAAGTGCTAAAGATTTGGTAAAACAGATGTTGGAAAGGGACCCTACGAAAAGACCTTCTGCTCATGAAGTCTTATGTCACCCTTGGATTGTTGATGATACAGTTGCCCCTGACAAACCTCTGGATTCAGCTGTTTTGACACGCCTAAAGCATTTCTCAGCAATGAATAAACTCAAGAAGATGGCACTACGTGTCATAGCAGAAAGACTTTCAGAGGAAGAAATAGGTGGGTTAAAAGAATTATTCAAGATGATTGACACAGACAACAGTGGGACCATAACTTTTGAGGAACTCAAGGATGGTTTGAAAAGTGTGGGCTCTAATCTCATGGAATCTGAAATTAAATCCCTTATGGATGCGGCTGATATAGACAACAATGGAACAATAGACTATGGTGAATTTCTTGCTGCTACTCTGCACTTGAATAAGATGGAAAGAGAGGAGAATTTGGTTGCAGCTTTTGCCTATTTTGATAAAGATGGTAGTGGTTACATCACCATTGATGAGCTTCAACAGGCTAGTAAAGACTTCGGCCTAGGTGAAGTACATCTGGATGAAATGATCAAAGAGATTGATCAAGACAATGATGGAAGAATTGATTATGGGGAGTTTGTAGCGATGATGAAAAAGGGCGATGTAGATGCTATTGGAAGGAGCAGAACCATGAAAGGCAATTTGAACTTCAATATTGCAGATGCATTTGGAGTGAAAGAATCTTCTTGA 1611 0.4202 MQRYGFASKSSSKCNTVLPYQTPRLRDHYLLGKKLGQGQFGTTYLCTHKATGKLYACKSIPKRKLLCQEDYDDVWREIQIMHHLSEHPNVVQIQGTYEDSVFVHLVMELCAGGELFDRIIQKGHYSEKEAVKLIKTIVGVVEACHSLGVMHRDLKPENFLFDTPGEDAKMKATDFGLSVFYKPGQAFHDVVGSPYYVAPEVLCKQYGPEVDVWSAGVILYILLSGVPPFWAGNDPNMDFVKLFFSVYYLVIYLLCFFFVPELHSPFLLPSETESGIFRQILHGELDFVSEPWPIISESAKDLVKQMLERDPTKRPSAHEVLCHPWIVDDTVAPDKPLDSAVLTRLKHFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFEELKDGLKSVGSNLMESEIKSLMDAADIDNNGTIDYGEFLAATLHLNKMEREENLVAAFAYFDKDGSGYITIDELQQASKDFGLGEVHLDEMIKEIDQDNDGRIDYGEFVAMMKKGDVDAIGRSRTMKGNLNFNIADAFGVKESS. 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07172 536 CDD STKc_CAMK 28 325 - -
Seca8g07172 536 ProSitePatterns EF-hand calcium-binding domain. 382 394 IPR018247 -
Seca8g07172 536 Gene3D - 335 509 - -
Seca8g07172 536 ProSiteProfiles EF-hand calcium-binding domain profile. 369 404 IPR002048 GO:0005509
Seca8g07172 536 ProSiteProfiles EF-hand calcium-binding domain profile. 405 440 IPR002048 GO:0005509
Seca8g07172 536 FunFam Calcium-dependent protein kinase 1 31 114 - -
Seca8g07172 536 ProSiteProfiles EF-hand calcium-binding domain profile. 479 510 IPR002048 GO:0005509
Seca8g07172 536 ProSitePatterns Protein kinases ATP-binding region signature. 35 58 IPR017441 GO:0005524
Seca8g07172 536 SUPERFAMILY EF-hand 365 505 IPR011992 -
Seca8g07172 536 SMART serkin_6 29 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07172 536 ProSitePatterns EF-hand calcium-binding domain. 418 430 IPR018247 -
Seca8g07172 536 ProSiteProfiles Protein kinase domain profile. 29 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07172 536 FunFam CDPK-related kinase 3 21 189 - -
Seca8g07172 536 CDD EFh 374 433 IPR002048 GO:0005509
Seca8g07172 536 ProSitePatterns EF-hand calcium-binding domain. 488 500 IPR018247 -
Seca8g07172 536 Pfam Protein kinase domain 31 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07172 536 PANTHER SERINE/THREONINE-PROTEIN KINASE 24 500 - -
Seca8g07172 536 Pfam EF-hand domain pair 444 505 IPR002048 GO:0005509
Seca8g07172 536 Pfam EF-hand domain pair 374 434 IPR002048 GO:0005509
Seca8g07172 536 ProSiteProfiles EF-hand calcium-binding domain profile. 441 476 IPR002048 GO:0005509
Seca8g07172 536 Gene3D Transferase(Phosphotransferase) domain 1 115 334 - -
Seca8g07172 536 Gene3D Phosphorylase Kinase; domain 1 30 114 - -
Seca8g07172 536 ProSitePatterns EF-hand calcium-binding domain. 454 466 IPR018247 -
Seca8g07172 536 SUPERFAMILY Protein kinase-like (PK-like) 25 336 IPR011009 -
Seca8g07172 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Seca8g07172 536 SMART efh_1 445 473 IPR002048 GO:0005509
Seca8g07172 536 SMART efh_1 479 507 IPR002048 GO:0005509
Seca8g07172 536 SMART efh_1 409 437 IPR002048 GO:0005509
Seca8g07172 536 SMART efh_1 373 401 IPR002048 GO:0005509
Seca8g07172 536 FunFam Calcium-dependent protein kinase 1 334 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07172 Seca-Chr8 167940539 167945452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07172 15 532 EF-hand Containing Proteins AT1G35670 77.799 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca8g07172 Pkinase 2.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07172 K13412 - gmx:547887 897.501