Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07168 ATGGAATCATGTGTGCCTCCAGGATTTAGATTTCATCCAACAGAAGAGGAACTTGTGGGGTATTACCTCAAGAGGAAGATAAACTCAATGAAAATTGATCTAGATGTTATTGTTGAGATTGATCTCTACAAAATGGAACCATGGGACATACAAGATAGGTGCAAGCTAGGATATGAGCAACAGAATGAGTGGTACTTTTTCAGTCATAAAGATAAGAAGTATCCAACAGGGACAAGAACTAACAGGGCCACTGCTGCTGGATTCTGGAAAGCAACTGGAAGGGACAAAGCTGTGACATCCAAAAACAAAATAATAGGAATGAGGAAGACACTTGTCTTCTACAAAGGACGTGCCCCAAATGGAAGGAAAACAGATTGGATTATGCATGAATATAGGCATCAAACCTCAGAACATGGCCCTCCTCAGGAAGAAGGATGGGTTGTGTGCCGAGCATTTAGAAAGCCAAGTCCAAGTCACAGGCAAGGTTTTGACCCATGGTGTAGTAGTAGTAGTAATCAATTATCACAGGCATATTTCAGAGACCAAAGACCCTTATCAATTACTGATATGCTTCATCCTTCCCCTGAATTAGCTACAAGTTTTAGTAGTCACCCCTTTAGCAGCTCAGATCAGCATGAGTTTCTATCTAACCACCAAAGTGCTCTTATTATGGATAATATTATTCATCACAAACAACAACTCATTCATGAGCTTCCACAGTTAGCTGATGATACTCCCACTACTCATCAACATAATGGCCTCACAAATGAAGATTGCAGTGATGAAATTAGGAGCAATAACAGTAGTGGACAAGGACAAGCAGGTGGTGGTATAATTGATTGGAAAAGCTTGGACAATTTGTTTGCTCCACAATTTACTGATGATACATCCAATTACTTTTCACATCCTCCTATTACCATGATGATACCACATAACCATCAACCTCAAAATCAACCTAATCATCATATGCTAGGCTGCTTTCCTCATTCTTCATAA 996 0.3976 MESCVPPGFRFHPTEEELVGYYLKRKINSMKIDLDVIVEIDLYKMEPWDIQDRCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVTSKNKIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFRKPSPSHRQGFDPWCSSSSNQLSQAYFRDQRPLSITDMLHPSPELATSFSSHPFSSSDQHEFLSNHQSALIMDNIIHHKQQLIHELPQLADDTPTTHQHNGLTNEDCSDEIRSNNSSGQGQAGGGIIDWKSLDNLFAPQFTDDTSNYFSHPPITMMIPHNHQPQNQPNHHMLGCFPHSS. 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07168 331 FunFam NAC domain-containing protein 14 158 - -
Seca8g07168 331 MobiDBLite consensus disorder prediction 243 276 - -
Seca8g07168 331 SUPERFAMILY NAC domain 3 154 IPR036093 GO:0003677|GO:0006355
Seca8g07168 331 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 249 - -
Seca8g07168 331 MobiDBLite consensus disorder prediction 243 274 - -
Seca8g07168 331 Gene3D NAC domain 14 157 IPR036093 GO:0003677|GO:0006355
Seca8g07168 331 Pfam No apical meristem (NAM) protein 6 132 IPR003441 GO:0003677|GO:0006355
Seca8g07168 331 ProSiteProfiles NAC domain profile. 5 154 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07168 Seca-Chr8 167924774 167927281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07168 1 330 NAC Transcription Factor Family AT1G71930 54.519 3.01e-114 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca8g07168 NAM 3.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07168 - - gmx:100811057 446.817