Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07163 ATGCATGATAGTGCTAGAGCAAATACAACAATAACGACAGAAAAAGAACACTTAGTACTAGAACTAAAAGAAGCAATTATGGGGGATTCCTATGTCACCAAGGACCACCTATTTGGTACTTCCTCTGAACAAACGGAGGATGGTGCTTGCCTATCAGCAATGTTGCTGAGTACTAATTTGGTGTATCCTGCAGTTGTGAATGCTGCTATTGAACTCAATTTATTTGAGATCATAGCAAAGGCAACCCCACCAGGTGCTTTCATGTCATCCTCTCAAATTGCTTCTAAGATGCCAACTCAGCACTCAGATTTGTCTAATAGGCTTGACCGCATGCTGCGTTTGCTTGCCAGTTACAACATTCTCACTTGTTCCACTCGCACCACTCAGAATGGTACCACCGAGACAGTTTATGGGCTCTCACAAGTTGGAAAATATTTAGTCCCTGATGAGAGTAAGGGCTACTTGGCTTCATTTGTAACATTCCTCTGTTATCCAGCACTGTTACAAGTTTGGTTGAACTTCAAAGAAGCAGTGATTGATGAAGACATTGACCTGTTTAAGAAACTTCATGGAATAACCAAGTACCAGTACATGGAAAAGGATCCAAAAATGAACCATATTTTTAACAAGGCTATGGCTGATGTGTGTGCAACAGAGATAAAAAGAATACTTGAGATTTATACTGGATTTGAGGGAATATCAACATTGGTTGATGTAGGAGGTGGAAATGGACAAAATCTTAAAATGATAATCTCCAAGTACCCTTCAATAAAGGGTATTAATTTTGATCTGCCCCAAGTCATTGAAAATGCACCACCAATTCCAGGGATTGAGCATGTTGGAGGAGATATGTTTGCAAGTGTTCCAAAGGGTGACGCCATAATACTAAAGGCAGTATGTCACAATTGGTCAGATGAAAAATGCTTAGAATTTTTAAGCAATTGTCATAAGGCTTTGTCACCAAATGGGAAGGTTATTGTTGTGGAGTTCATATTACCTGAAGAACCAGAGCCAACTGAAGCATCTCAGCTTGTTTCCACTCTTGACAACCTTATGTTTATCACAGTTGGTGGAAGGGAAAGAACTCAGAAACAATATGAGAATTTGTGCCAGCTCTCTGGATTTTCTAAATTTCGTGTTGCTTGCCGTGCTTTCTCTAGCTTGGGAGTGATGGAATTTTGCAAATGA 1188 0.399 MHDSARANTTITTEKEHLVLELKEAIMGDSYVTKDHLFGTSSEQTEDGACLSAMLLSTNLVYPAVVNAAIELNLFEIIAKATPPGAFMSSSQIASKMPTQHSDLSNRLDRMLRLLASYNILTCSTRTTQNGTTETVYGLSQVGKYLVPDESKGYLASFVTFLCYPALLQVWLNFKEAVIDEDIDLFKKLHGITKYQYMEKDPKMNHIFNKAMADVCATEIKRILEIYTGFEGISTLVDVGGGNGQNLKMIISKYPSIKGINFDLPQVIENAPPIPGIEHVGGDMFASVPKGDAIILKAVCHNWSDEKCLEFLSNCHKALSPNGKVIVVEFILPEEPEPTEASQLVSTLDNLMFITVGGRERTQKQYENLCQLSGFSKFRVACRAFSSLGVMEFCK. 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07163 395 Gene3D Vaccinia Virus protein VP39 147 395 IPR029063 -
Seca8g07163 395 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 153 384 IPR029063 -
Seca8g07163 395 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 54 395 IPR016461 GO:0008168
Seca8g07163 395 SUPERFAMILY "Winged helix" DNA-binding domain 47 150 IPR036390 -
Seca8g07163 395 CDD AdoMet_MTases 235 332 - -
Seca8g07163 395 FunFam Caffeic acid 3-O-methyltransferase 33 146 - -
Seca8g07163 395 PIRSF O-mtase 32 395 IPR016461 GO:0008168
Seca8g07163 395 Pfam Dimerisation domain 65 116 IPR012967 GO:0046983
Seca8g07163 395 FunFam Caffeic acid O-methyltransferase 149 395 - -
Seca8g07163 395 Pfam O-methyltransferase domain 171 376 IPR001077 GO:0008171
Seca8g07163 395 Gene3D - 31 146 IPR036388 -
Seca8g07163 395 PANTHER O-METHYLTRANSFERASE 53 378 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07163 Seca-Chr8 167860102 167861916 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07163 40 385 Monolignol Biosynthesis Gene Families AT5G54160 47.550 7.41e-114 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07163 - - gmx:100787536 650.588