Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07161 ATGGGGGATTCCTATGACACCAAGGATCACCTATTTGGTACTTCCTCTGAACAAACAGAGGATGGTGCTTGCTTATCAGCAATGCTACTGAGTACTAATTTGGTGTATCCAGCGGTTGTGAATGCTGCTATTGAACTCAATTTATTTGAGATCATAGCAAAGGCAACCCCACCAGGTGCTTACATGTCATCCTCTGAAATTGCTTCTAAGATGCCAACTCAGCACTCAGACTTGTCTAATAGGCTTGACCGCATGCTGCGTTTGCTTGCCAGTTACAACATTCTCATTTGTTCCACTCGCACCACTCAGAATGGTACCACCGAGACAGTTTATGGGCTCTCACAAGTTGGAAAATATTTAGTCCCTGATGAGAGTAAGGGCTACTTGGCTTCATTTGTAACATTCCTCTGTTATCCAGCACTGTTACAGGTTTGGTTGAACTTCAAGGAAGCGGTGATTGATGCAGACATTGACCTGTTTAAGAAACTTCATGGAATAACCAAGTACCAATACATGGAAAAGGATCCAAAAATGAACCACATATTTAACAAGGCTATGGCTGATGTGTGTGCAACAGAGATTAAAAGAATACTTGAAATTTATACTGGATTTGAGGGAATATCAACATTGGTTGATGTAGGAGGTGGAAATGGACAAAATCTTAAAATGATAATATCCAAGTACCCTTTAATAAAGGGTATTAATTTTGATCTCCCCCAAGTCATTGAAAATGCATCACCACTTCCAGGGATTGAGCATGTTGGAGGAGATATGTTTGCAAGCGTTCCAAAGGGTGACGCCATAATACTAAAGGCTGTATGTCATAATTGGTCAGATGAAAAATGTGTGGAATTTTTAAGCAATTGTCGCAAAGCATTGTCACCAAATGGGAAGGTGATTGTTGTGGAGTTCATATTGCCTGAAGAACCAGAACCAACGGAAGAATCTCGACTTGTTTCCACTCTCGACAATCTTATGTTTATCACTGTTGGTGGAAGGGAACGAACTCAGAAACAATATGAGAATTTGTGCAAACTCTCTGGATTTTCTAAATTTCAAGTTGCTTCTCGTGCTTTCTCTAGTTTGGGAGTGATGGAATTTTATAAATAA 1110 0.4 MGDSYDTKDHLFGTSSEQTEDGACLSAMLLSTNLVYPAVVNAAIELNLFEIIAKATPPGAYMSSSEIASKMPTQHSDLSNRLDRMLRLLASYNILICSTRTTQNGTTETVYGLSQVGKYLVPDESKGYLASFVTFLCYPALLQVWLNFKEAVIDADIDLFKKLHGITKYQYMEKDPKMNHIFNKAMADVCATEIKRILEIYTGFEGISTLVDVGGGNGQNLKMIISKYPLIKGINFDLPQVIENASPLPGIEHVGGDMFASVPKGDAIILKAVCHNWSDEKCVEFLSNCRKALSPNGKVIVVEFILPEEPEPTEESRLVSTLDNLMFITVGGRERTQKQYENLCKLSGFSKFQVASRAFSSLGVMEFYK. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07161 369 FunFam Caffeic acid 3-O-methyltransferase 6 120 - -
Seca8g07161 369 FunFam Caffeic acid O-methyltransferase 123 369 - -
Seca8g07161 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 127 360 IPR029063 -
Seca8g07161 369 SUPERFAMILY "Winged helix" DNA-binding domain 21 124 IPR036390 -
Seca8g07161 369 PANTHER O-METHYLTRANSFERASE 27 359 IPR016461 GO:0008168
Seca8g07161 369 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 28 369 IPR016461 GO:0008168
Seca8g07161 369 Gene3D Vaccinia Virus protein VP39 121 369 IPR029063 -
Seca8g07161 369 CDD AdoMet_MTases 209 306 - -
Seca8g07161 369 Pfam Dimerisation domain 39 90 IPR012967 GO:0046983
Seca8g07161 369 Gene3D - 6 120 IPR036388 -
Seca8g07161 369 Pfam O-methyltransferase domain 145 350 IPR001077 GO:0008171
Seca8g07161 369 PIRSF O-mtase 6 369 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07161 Seca-Chr8 167832430 167834774 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07161 14 359 Monolignol Biosynthesis Gene Families AT5G54160 47.550 5.02e-111 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07161 - - gmx:100787536 645.58