Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07160 ATGGGGGATTCCTGCAGTTTCAGCAAGGACATAACTTGCTCTGGAAAAACAGAGGATGGTGCTCACCTATCTGCAATGCTACTCAGCACCAATATTGTATATTCATCAGTCCTCAATGCTGCTATTGACCTCAATTTATTTGACATCATAGCTAAGGCAACCCCACCTGGTTCTTTCATCTCATCCTCTCAAATTGCCTCTAAGATGCCATTGCAAAACCAACACAAAGACTTGCCTAATAGGCTTGACCGCATGCTCCGTATGCTTGCCAGTTACAACATTCTCACTTTTGCCACTCGCACCACTCAGAATGGCACCACCGAGAGAGTTTATGGCCTCTCCCAAGTTGGAAAACACTTTGTCCCTGATGACACTAAGGGCAACAATGCTTCATTCGTATCATATCTCTCTTATCCAGCACTGTTACAAGTTTGGTTGAACTTCAAGGAAGCTGTGATTAATGAAGACATTGACCTGTTCAAGAAACTTCATGGAGTAACTGTGTACGAGTACATGGAAAAGGATCCAAAACTGAGCCACATTTTTAACAAAGCTATGGCCGATATGTCTACAAAAGTGATGGAAAAAATACTTGACACATATACTGGATTTGAGGGAATATCAACATTGGTTGATGTAGGAGGTGGGAATGGTCAATTTCTCAAAACCATAATCTCCAGGTACCCTTTAATAAAGGGAATTAATTTTGATCTGCCCCATGCCATTCAAAAAGCACCATCTCTTCCAGAAGGGATTGAGCATGTTGGAGGAGATATGTTTGCAAGTGTTCCACAGGGTGACGCCATGTTACTAAAGAGTATATGCCATAATTGGTCAGATGAAAAATGCATAGAATTTTTAAGCAATTGTCACAAAGCATTGTCTCCAAATGGGAAGGTTATTATTATGGAGTTCATAACGCCTGAAGAACCAGAGCCAACGGAAGCATCCCAGCTTCTTTCCACTATTGACAACCTCATGTTTATCACAGTTGGTGGAAGGGAAAGAACTCAGAAACAATATGAGAATTTGTGCAAGTTATCTGGATTTTCTAAATTTCATGTTGCTTGTTTAGCCTTTTCTAGTTTCGGAGTCATGGAGTTTTATAAATGA 1113 0.4061 MGDSCSFSKDITCSGKTEDGAHLSAMLLSTNIVYSSVLNAAIDLNLFDIIAKATPPGSFISSSQIASKMPLQNQHKDLPNRLDRMLRMLASYNILTFATRTTQNGTTERVYGLSQVGKHFVPDDTKGNNASFVSYLSYPALLQVWLNFKEAVINEDIDLFKKLHGVTVYEYMEKDPKLSHIFNKAMADMSTKVMEKILDTYTGFEGISTLVDVGGGNGQFLKTIISRYPLIKGINFDLPHAIQKAPSLPEGIEHVGGDMFASVPQGDAMLLKSICHNWSDEKCIEFLSNCHKALSPNGKVIIMEFITPEEPEPTEASQLLSTIDNLMFITVGGRERTQKQYENLCKLSGFSKFHVACLAFSSFGVMEFYK. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07160 370 CDD AdoMet_MTases 209 303 - -
Seca8g07160 370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 132 368 IPR029063 -
Seca8g07160 370 PIRSF O-mtase 4 370 IPR016461 GO:0008168
Seca8g07160 370 Pfam Dimerisation domain 37 90 IPR012967 GO:0046983
Seca8g07160 370 Gene3D - 4 120 IPR036388 -
Seca8g07160 370 SUPERFAMILY "Winged helix" DNA-binding domain 19 124 IPR036390 -
Seca8g07160 370 PANTHER O-METHYLTRANSFERASE 25 360 IPR016461 GO:0008168
Seca8g07160 370 Gene3D Vaccinia Virus protein VP39 122 370 IPR029063 -
Seca8g07160 370 FunFam Caffeic acid 3-O-methyltransferase 6 120 - -
Seca8g07160 370 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 26 370 IPR016461 GO:0008168
Seca8g07160 370 Pfam O-methyltransferase domain 145 351 IPR001077 GO:0008171
Seca8g07160 370 FunFam Caffeic acid O-methyltransferase 123 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07160 Seca-Chr8 167822410 167824477 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07160 17 360 Monolignol Biosynthesis Gene Families AT5G54160 45.217 9.55e-103 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07160 - - gmx:100798347 539.265