Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07157 ATGTTTGCAAGTGTTCCACGGGGTGACGCCATAATACTAAAGAATGTATGCCATAATTGGTCAGATGAAAAATGCATAGAATTTTTAAGCAATTGTCACAAGGCTTTGTCACCAAATGGGAAGGTTATTGTCATGGAGTTCATATCGCCTGAAGAACCAGAGCCAACGGAAGCATCCCAGCTTGTTTCAACTATTGACAACCTCATGTTTATCACAGTTGGTGGAAGGGAAAGAACTCAAAAACAATATGAGAATTTGTGCAAGTTATCTGGATTTTCAAAACTTCATGTTCCCTGTTGTGCTTTTTCTAGTTTCGGAGTGATGGACAAGGATATAACTTGCTCTGAAAAAACAGAGGACGGTGCTCATCTATCTGCAATGCTACTCAGCACTAATCTGGTATATTCATCAGTCCTCAATGCTGCTATTGACCTCAATTTATTTGATATCATAGCTAAGGCAACCCCACCTGGTTCTTTCATCTCATCCTCTCAAATTGCCTCTAAGATGCCATTGCAAAACCAACACAAAGACTTGCCTAATAGGCTTGACCGCATGCTCCGTATGCTTGCCAGTTACAACATTCTCACTTTTGCCACTCGCACCACTCAGAATGGCACCACCGAGAGAGTTTATGGCCTCTCCCAAGTTGGAAAACACTTTGTCCCTGATGACACTAAGGGCAACAATGCTTCATTCGTATCATATCTCTCTTATCCAGCACTGTTACAAGTTTGGTTGAACTTCAAGGAAGCTGTGATTAATGAAGACATTGACCTGTTCAAGAAACTTCATGGAGTAACTGTGTACGAGTACATGGAAAAGGATCCAAAACTGAGCCACATTTTTAACAAAGCTATGGCCGATATGTCTACAAAAGTGATGGAAAAAATACTTGACACATATACTGGATTTGAGGGAATATCAACATTGGTTGATGTAGGAGGTGGGAATGGTCAATTTCTCAAAACCATAATCTCCAGGTACCCTTTAATAAAGGGAATTAATTTTGATCTGCCCCATGCCATTCAAAAAGCACCATCTCTTCCAGGGATTGAGCATGTTGGAGGAGATATGTTTGCAAGTGTTCCACAGGGTGACGCCATGTTACTAAAGAGTATATGCCATAATTGGTCAGATGAAAAATGCATAGAATTTTTAAGCAATTGTCACAAAGCATTGTCGCCAAATGGGAAGGTTATTATTATGGAGTTCATAACACCTGAAGAACCAGAGCCAACGGAAGCATCCCAACTTCTTTCGACTATTGACAACCTCATGTTTATCACAGTTGGTGGAAGGGAAAGAACACAGAAACAATATGAGAATTTGTGCAAGTTATCTGGATTTTCAAAATTTCATGTTGCTTGTTTGGCCTTTTCTAGTTTCGGAGTGATGGAATTTTATAAATAA 1413 0.3984 MFASVPRGDAIILKNVCHNWSDEKCIEFLSNCHKALSPNGKVIVMEFISPEEPEPTEASQLVSTIDNLMFITVGGRERTQKQYENLCKLSGFSKLHVPCCAFSSFGVMDKDITCSEKTEDGAHLSAMLLSTNLVYSSVLNAAIDLNLFDIIAKATPPGSFISSSQIASKMPLQNQHKDLPNRLDRMLRMLASYNILTFATRTTQNGTTERVYGLSQVGKHFVPDDTKGNNASFVSYLSYPALLQVWLNFKEAVINEDIDLFKKLHGVTVYEYMEKDPKLSHIFNKAMADMSTKVMEKILDTYTGFEGISTLVDVGGGNGQFLKTIISRYPLIKGINFDLPHAIQKAPSLPGIEHVGGDMFASVPQGDAMLLKSICHNWSDEKCIEFLSNCHKALSPNGKVIIMEFITPEEPEPTEASQLLSTIDNLMFITVGGRERTQKQYENLCKLSGFSKFHVACLAFSSFGVMEFYK. 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07157 470 FunFam Caffeic acid O-methyltransferase 224 470 - -
Seca8g07157 470 Gene3D Vaccinia Virus protein VP39 1 107 IPR029063 -
Seca8g07157 470 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 127 470 IPR016461 GO:0008168
Seca8g07157 470 Pfam Dimerisation domain 138 191 IPR012967 GO:0046983
Seca8g07157 470 SUPERFAMILY "Winged helix" DNA-binding domain 120 225 IPR036390 -
Seca8g07157 470 FunFam Caffeic acid 3-O-methyltransferase 106 221 - -
Seca8g07157 470 Gene3D - 108 221 IPR036388 -
Seca8g07157 470 PANTHER O-METHYLTRANSFERASE 1 92 IPR016461 GO:0008168
Seca8g07157 470 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 112 IPR016461 GO:0008168
Seca8g07157 470 CDD AdoMet_MTases 310 403 - -
Seca8g07157 470 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 100 IPR029063 -
Seca8g07157 470 Pfam O-methyltransferase domain 1 93 IPR001077 GO:0008171
Seca8g07157 470 Pfam O-methyltransferase domain 246 451 IPR001077 GO:0008171
Seca8g07157 470 Gene3D Vaccinia Virus protein VP39 223 470 IPR029063 -
Seca8g07157 470 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 233 468 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07157 Seca-Chr8 167792543 167797945 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07157 109 460 Monolignol Biosynthesis Gene Families AT5G54160 44.476 6.34e-103 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07157 - - gmx:100798347 544.658