Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07154 ATGAACATGGGCAGGTATGAATACACAACCTCTTTCCTACGTACTTTACTCTTCTTTGGGTTCTGTCCTTTGGTTTTGTCTCTGCTGTCTCAAAACCAAACAAACACCATGATCAATCTCTCCCAACTTGTTAATGTCCCTGATTGGAGCAGCAGCAAAGACCCCAGTCCATGTTCATGGAAAGGGGTCAGCTGTGACCTTAGCAACTCATCTGTGCTCGAGATTATCCTATCTGGGTATTCTCTCTCTTCTCCAGAATTTCTCCATGTTGTTTGCAAGATTGAAACTTTGCAGCACCTTGATGTCTCAAACAACCGTATCAGCTCTATCCCAGATGAGTTCATTGCTGAATGTGGAAAGATTGAGCATATAAAGCTGCTGAATTTCAGTGGAAACGTGTTAAGTGGTGCTTTGCCTACTTTTCATGGTTTTGATGGATTGGAATCCCTGGATATGTCTTTCAATGACTTGAAAGGGAGTATTGGTTTACAGCTTGATGGATTGGCTAGCCTCAAGAATTTGAATCTCAGTAACAATGGCTTCACTGGGAATCTTCCTACCAACCTGGGAAGGTCTATGGTTTTGGAGCAGCTTCTGCTTTCAGCGAATCAGTTTGAAGGAACAATCCCAGATCAAATTTTGAGCTATAGAAATTTGACTGTGATTGATCTTAAGGAAAATAGGCTTATTGGGTCTATCCCTACCAATATTGGAAATCTATCCAAATTGGAATTTTTGAGTCTTTCCGCTAATGGACTCGTTGGGAAAATCCCAATAACACTCCTGAGCATAACAACCCTTACAAGATTCGCTGCAAATTTAAACTATTTCACTGGTGACATTCCTCCTGGAATTACAAAATTTCTCAAAAATTTGGATCTTAGTTATAATAATTTAGTTGGGTCCATTCCAGAAGACCTTTTATCTCCATCACAGCTCCAGGCTGTAGATTTGTCCTATAACAAGTTACGTGGGCTTTTACCTGCAAATATTTCTTCTAATTTAGTGAGGTTGAGATTAGGAGGAAATATGCTGCGTGGAGAGGTTCCTTCAGGTACTTGTGCAACCGTTCAAGCTTTGACATACATGGAGCTGGAAAACAATGAATTGTCAGGTTTGATACCTCCTGAATTGGGTTCTTGCCGGAAACTGGCCTTGTTGAATTTGGCTGGCAACCAATTGACTGGGGCATTGCCTCCAGAACTTGGCAACCTTAGCAATCTTCAAGTCTTGAAGCTTCAAATGAACAAGCTTAGTGGGACCATCCCAATTCAAATTACACAACTACACAAGTTGTCTACCCTGAATTTGAGCCGGAATTCTCTGGATGGATCAATTCCATCTGAAATGTCAAGCTTGATAAGCCTTACATTTCTGCACTTGCAAGAAAACAAGCTCAGCGGTTCTATACCCTCATCCATTAACAACTTGAGATCTCTTATAGAAGTCCAACTTGGGGCAAACCAGCTAAGTGGTAACATTCCACAGATGCCACTGAGTCTACAGATTTCCTTGAATCTCAGTAGTAACCACTTTAGTGGACCTATTCCTAGCAGTTTTGGTGATTTGACTAGCCTAGAAGTTTTGGATCTCTCAAATAACAGCTTTTCTGGCGAAATTCCTCAGGCTCTGACTAAAATGGCAGCATTGACACAGTTACAACTTTCAAACAATAATCTGACAGGTTTCATTCCAACATTTGCTCCTTATGTTAAAATCGATATAACAGGAAATAATGTCATGAACAATACTAATCCCCCACCCAATAGTTCTCCAACATCATCAAAGAAAGGGAAATCTGTTACTGTGGCTGTTCTTGTTGCAATTGCTGCTGCTATTTTTCTGGTTGGCCTGATCTCTCTGCTGGTTGTATCAATCTCACGACACTATTGCAGGGTGAATGATGAACACTTACACTCAGGGGAAGGTGAAAATGTTCAACTTCCTCAGGTCATCCAAAGTAACTTGTTAACTCCAAATGGGATCCATAGATCAAATATTGACTTCTCCAAGGCAATGGAAGCTGTTGCTGAAACATCAAACATTACTCTGAAAACCAGGTTTTCAACTTATTATAAGGCCATAATGCCATCTGGATCAGTCTATTCTGTCAAGAAGCTTAACTGCAGTGACAAGATATTCCCAGTGAGCAGTCTTGATAAATTTGGGAGAGAGCTAGATGTCTTGGCAAAGCTGAATAATTCAAATGTCATGACTCCTCTAGCCTATATTCTGTCCACTGGCAGTGCTTATATATTATATGAGTTTGTCTCAAATGGCTCTCTTTTTGATGTGCTTCATGGAAGCATGGGACACTCTTTAGATTGGGCAAGCAGATATAGTATAGCTGTTGGGGTGGCTCAGGGTCTCTCTTTTCTGCATGGATTTTCCTCTGGTCCAATACTTCTCCTTGACTTATCAAGTAAAAGTATTATGCTGAAATCCCTCAAGGAGCCTCTAGTTGGGGATATTGAACACTATAAGGTGATTGATCCCTCCAAGAGTACAGGGAGCTTTTCTGCAGTTGCTGGTTCTGTTGGCTATATTCCTCCAGAGTATGCGTACACAATGAGAGTGACAATGGCAGGGAATGTCTATAGCTTTGGGATCATTCTACTCGAATTGCTGACAGGCAAACCGGCAGTGACTGAAGGAACTGAATTGGTTAAATGGGTTTTGCGTAATTCAAGAAATCAAGATTACATTCTTGATTTTAATGCTAGTAGAGCATCACAGGCTGTCAGAAATCAAATGCTTGCAATTCTGAAGGTTGCTTTTGATTGTGTAAGCACATCCCCTGAGGCTAGACCAAAGATGAAGACTGTGCTACGGATGTTGCTAAATGCTAGATAA 2853 0.409 MNMGRYEYTTSFLRTLLFFGFCPLVLSLLSQNQTNTMINLSQLVNVPDWSSSKDPSPCSWKGVSCDLSNSSVLEIILSGYSLSSPEFLHVVCKIETLQHLDVSNNRISSIPDEFIAECGKIEHIKLLNFSGNVLSGALPTFHGFDGLESLDMSFNDLKGSIGLQLDGLASLKNLNLSNNGFTGNLPTNLGRSMVLEQLLLSANQFEGTIPDQILSYRNLTVIDLKENRLIGSIPTNIGNLSKLEFLSLSANGLVGKIPITLLSITTLTRFAANLNYFTGDIPPGITKFLKNLDLSYNNLVGSIPEDLLSPSQLQAVDLSYNKLRGLLPANISSNLVRLRLGGNMLRGEVPSGTCATVQALTYMELENNELSGLIPPELGSCRKLALLNLAGNQLTGALPPELGNLSNLQVLKLQMNKLSGTIPIQITQLHKLSTLNLSRNSLDGSIPSEMSSLISLTFLHLQENKLSGSIPSSINNLRSLIEVQLGANQLSGNIPQMPLSLQISLNLSSNHFSGPIPSSFGDLTSLEVLDLSNNSFSGEIPQALTKMAALTQLQLSNNNLTGFIPTFAPYVKIDITGNNVMNNTNPPPNSSPTSSKKGKSVTVAVLVAIAAAIFLVGLISLLVVSISRHYCRVNDEHLHSGEGENVQLPQVIQSNLLTPNGIHRSNIDFSKAMEAVAETSNITLKTRFSTYYKAIMPSGSVYSVKKLNCSDKIFPVSSLDKFGRELDVLAKLNNSNVMTPLAYILSTGSAYILYEFVSNGSLFDVLHGSMGHSLDWASRYSIAVGVAQGLSFLHGFSSGPILLLDLSSKSIMLKSLKEPLVGDIEHYKVIDPSKSTGSFSAVAGSVGYIPPEYAYTMRVTMAGNVYSFGIILLELLTGKPAVTEGTELVKWVLRNSRNQDYILDFNASRASQAVRNQMLAILKVAFDCVSTSPEARPKMKTVLRMLLNAR. 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07154 950 Pfam Leucine rich repeat N-terminal domain 47 66 IPR013210 -
Seca8g07154 950 PRINTS Leucine-rich repeat signature 523 536 - -
Seca8g07154 950 PRINTS Leucine-rich repeat signature 97 110 - -
Seca8g07154 950 ProSiteProfiles Protein kinase domain profile. 677 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07154 950 SMART LRR_bac_2 357 378 - -
Seca8g07154 950 SMART LRR_bac_2 547 567 - -
Seca8g07154 950 SMART LRR_bac_2 94 113 - -
Seca8g07154 950 SMART LRR_bac_2 168 188 - -
Seca8g07154 950 SMART LRR_bac_2 310 330 - -
Seca8g07154 950 Pfam Leucine rich repeat 96 157 IPR001611 GO:0005515
Seca8g07154 950 Pfam Leucine rich repeat 504 560 IPR001611 GO:0005515
Seca8g07154 950 Pfam Leucine rich repeat 406 466 IPR001611 GO:0005515
Seca8g07154 950 Gene3D Transferase(Phosphotransferase) domain 1 757 950 - -
Seca8g07154 950 FunFam leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 757 950 - -
Seca8g07154 950 Gene3D Phosphorylase Kinase; domain 1 653 756 - -
Seca8g07154 950 SUPERFAMILY L domain-like 43 328 - -
Seca8g07154 950 SUPERFAMILY RNI-like 258 579 - -
Seca8g07154 950 Gene3D Ribonuclease Inhibitor 28 188 IPR032675 -
Seca8g07154 950 Pfam Protein kinase domain 688 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07154 950 SMART LRR_typ_2 547 569 IPR003591 -
Seca8g07154 950 SMART LRR_typ_2 168 192 IPR003591 -
Seca8g07154 950 SMART LRR_typ_2 405 429 IPR003591 -
Seca8g07154 950 SMART LRR_typ_2 523 546 IPR003591 -
Seca8g07154 950 SMART LRR_typ_2 240 264 IPR003591 -
Seca8g07154 950 SMART LRR_typ_2 453 477 IPR003591 -
Seca8g07154 950 SMART LRR_typ_2 94 117 IPR003591 -
Seca8g07154 950 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 31 187 - -
Seca8g07154 950 Gene3D Ribonuclease Inhibitor 189 288 IPR032675 -
Seca8g07154 950 ProSiteProfiles Leucine-rich repeat profile. 96 117 IPR001611 GO:0005515
Seca8g07154 950 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 645 756 - -
Seca8g07154 950 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 217 946 - -
Seca8g07154 950 Gene3D Ribonuclease Inhibitor 289 592 IPR032675 -
Seca8g07154 950 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 329 585 - -
Seca8g07154 950 SUPERFAMILY Protein kinase-like (PK-like) 688 946 IPR011009 -
Seca8g07154 950 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 188 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07154 Seca-Chr8 167767379 167771028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07154 147 950 Receptor kinase-like Gene Family AT2G41820 38.369 5.27e-156 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca8g07154 Pkinase 1.7e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07154 - - gmx:100796647 1226.08